Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00625 and AO356_00630 are separated by 9 nucleotides AO356_00630 and AO356_00635 are separated by 83 nucleotides AO356_00635 and AO356_00640 are separated by 163 nucleotides
AO356_00625: AO356_00625 - (Fe-S)-binding protein, at 133,960 to 135,216
_00625
AO356_00630: AO356_00630 - ferredoxin, at 135,226 to 136,362
_00630
AO356_00635: AO356_00635 - phenylacetic acid degradation protein, at 136,446 to 136,886
_00635
AO356_00640: AO356_00640 - TetR family transcriptional regulator, at 137,050 to 137,670
_00640
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1 at 134.285 kb on - strand, within AO356_00625 at 134.299 kb on + strand, within AO356_00625 at 134.482 kb on + strand, within AO356_00625 at 134.483 kb on - strand, within AO356_00625 at 134.510 kb on - strand, within AO356_00625 at 134.510 kb on - strand, within AO356_00625 at 134.573 kb on - strand, within AO356_00625 at 134.728 kb on + strand, within AO356_00625 at 134.729 kb on - strand, within AO356_00625 at 134.947 kb on + strand, within AO356_00625 at 134.947 kb on + strand, within AO356_00625 at 135.124 kb on + strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.160 kb on + strand at 135.160 kb on + strand at 135.185 kb on - strand at 135.282 kb on + strand at 135.283 kb on - strand at 135.487 kb on + strand, within AO356_00630 at 135.487 kb on + strand, within AO356_00630 at 135.488 kb on - strand, within AO356_00630 at 135.665 kb on - strand, within AO356_00630 at 135.665 kb on - strand, within AO356_00630 at 135.967 kb on + strand, within AO356_00630 at 135.968 kb on - strand, within AO356_00630 at 136.021 kb on + strand, within AO356_00630 at 136.360 kb on + strand at 136.361 kb on - strand at 136.447 kb on + strand at 136.458 kb on + strand at 136.458 kb on + strand at 136.603 kb on + strand, within AO356_00635 at 136.810 kb on + strand, within AO356_00635 at 136.811 kb on - strand, within AO356_00635 at 136.833 kb on - strand, within AO356_00635 at 136.833 kb on - strand, within AO356_00635 at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.865 kb on - strand at 136.931 kb on - strand at 137.019 kb on + strand at 137.020 kb on - strand at 137.020 kb on - strand at 137.020 kb on - strand at 137.153 kb on + strand, within AO356_00640 at 137.154 kb on - strand, within AO356_00640 at 137.154 kb on - strand, within AO356_00640 at 137.212 kb on + strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.254 kb on + strand, within AO356_00640 at 137.255 kb on - strand, within AO356_00640 at 137.255 kb on - strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.297 kb on - strand, within AO356_00640 at 137.297 kb on - strand, within AO356_00640 at 137.350 kb on + strand, within AO356_00640 at 137.350 kb on + strand, within AO356_00640
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 134,285 - AO356_00625 0.26 +0.5 134,299 + AO356_00625 0.27 +0.4 134,482 + AO356_00625 0.42 -1.1 134,483 - AO356_00625 0.42 -0.7 134,510 - AO356_00625 0.44 -0.6 134,510 - AO356_00625 0.44 -1.5 134,573 - AO356_00625 0.49 +0.1 134,728 + AO356_00625 0.61 +1.0 134,729 - AO356_00625 0.61 +0.3 134,947 + AO356_00625 0.79 -0.3 134,947 + AO356_00625 0.79 +0.9 135,124 + -0.4 135,125 - +0.5 135,125 - +0.7 135,125 - +0.5 135,160 + -1.0 135,160 + -1.6 135,185 - +1.1 135,282 + +0.1 135,283 - +1.0 135,487 + AO356_00630 0.23 -0.1 135,487 + AO356_00630 0.23 -0.2 135,488 - AO356_00630 0.23 -2.0 135,665 - AO356_00630 0.39 +0.4 135,665 - AO356_00630 0.39 +0.1 135,967 + AO356_00630 0.65 +0.3 135,968 - AO356_00630 0.65 -0.2 136,021 + AO356_00630 0.70 -1.4 136,360 + +0.1 136,361 - +0.9 136,447 + +0.1 136,458 + +0.5 136,458 + +0.1 136,603 + AO356_00635 0.36 +0.5 136,810 + AO356_00635 0.83 +0.1 136,811 - AO356_00635 0.83 +0.7 136,833 - AO356_00635 0.88 +0.9 136,833 - AO356_00635 0.88 +0.1 136,864 + -1.0 136,864 + -0.2 136,864 + +0.2 136,864 + +0.2 136,864 + +0.6 136,865 - -0.0 136,931 - -0.2 137,019 + -0.3 137,020 - +0.1 137,020 - +0.2 137,020 - -0.9 137,153 + AO356_00640 0.17 -0.3 137,154 - AO356_00640 0.17 -0.8 137,154 - AO356_00640 0.17 -0.6 137,212 + AO356_00640 0.26 +0.5 137,213 - AO356_00640 0.26 +0.4 137,213 - AO356_00640 0.26 -0.6 137,213 - AO356_00640 0.26 -0.6 137,254 + AO356_00640 0.33 -0.4 137,255 - AO356_00640 0.33 +0.1 137,255 - AO356_00640 0.33 -0.4 137,296 + AO356_00640 0.40 +1.0 137,296 + AO356_00640 0.40 -0.6 137,296 + AO356_00640 0.40 -0.1 137,297 - AO356_00640 0.40 -0.4 137,297 - AO356_00640 0.40 +0.3 137,350 + AO356_00640 0.48 +0.0 137,350 + AO356_00640 0.48 +0.8
Or see this region's nucleotide sequence