Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000064 and ABIE53_000065 are separated by 181 nucleotides ABIE53_000065 and ABIE53_000066 are separated by 262 nucleotides
ABIE53_000064: ABIE53_000064 - glycosyltransferase involved in cell wall biosynthesis, at 72,721 to 73,548
_000064
ABIE53_000065: ABIE53_000065 - DNA-binding transcriptional LysR family regulator, at 73,730 to 74,680
_000065
ABIE53_000066: ABIE53_000066 - outer membrane protein OmpA-like peptidoglycan-associated protein, at 74,943 to 76,829
_000066
Position (kb) 73
74
75 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 72.911 kb on + strand, within ABIE53_000064 at 72.911 kb on + strand, within ABIE53_000064 at 72.911 kb on + strand, within ABIE53_000064 at 72.912 kb on - strand, within ABIE53_000064 at 72.938 kb on + strand, within ABIE53_000064 at 72.939 kb on - strand, within ABIE53_000064 at 72.939 kb on - strand, within ABIE53_000064 at 73.073 kb on + strand, within ABIE53_000064 at 73.073 kb on + strand, within ABIE53_000064 at 73.073 kb on + strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.178 kb on + strand, within ABIE53_000064 at 73.178 kb on + strand, within ABIE53_000064 at 73.178 kb on + strand, within ABIE53_000064 at 73.179 kb on - strand, within ABIE53_000064 at 73.179 kb on - strand, within ABIE53_000064 at 73.214 kb on + strand, within ABIE53_000064 at 73.215 kb on - strand, within ABIE53_000064 at 73.259 kb on + strand, within ABIE53_000064 at 73.259 kb on + strand, within ABIE53_000064 at 73.259 kb on + strand, within ABIE53_000064 at 73.259 kb on + strand, within ABIE53_000064 at 73.259 kb on + strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.388 kb on + strand, within ABIE53_000064 at 73.388 kb on + strand, within ABIE53_000064 at 73.388 kb on + strand, within ABIE53_000064 at 73.389 kb on - strand, within ABIE53_000064 at 73.389 kb on - strand, within ABIE53_000064 at 73.389 kb on - strand, within ABIE53_000064 at 73.474 kb on - strand at 73.474 kb on - strand at 73.508 kb on + strand at 73.508 kb on + strand at 73.508 kb on + strand at 73.508 kb on + strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.518 kb on + strand at 73.518 kb on + strand at 73.519 kb on - strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.531 kb on - strand at 73.531 kb on - strand at 73.531 kb on - strand at 73.531 kb on - strand at 73.590 kb on + strand at 73.590 kb on + strand at 73.590 kb on + strand at 73.590 kb on + strand at 73.590 kb on + strand at 73.591 kb on - strand at 73.591 kb on - strand at 73.591 kb on - strand at 73.619 kb on + strand at 73.619 kb on + strand at 73.619 kb on + strand at 73.619 kb on + strand at 73.620 kb on - strand at 73.620 kb on - strand at 73.620 kb on - strand at 73.620 kb on - strand at 73.620 kb on - strand at 73.622 kb on + strand at 73.622 kb on + strand at 73.623 kb on - strand at 73.623 kb on - strand at 73.672 kb on + strand at 73.672 kb on + strand at 73.672 kb on + strand at 73.673 kb on - strand at 73.673 kb on - strand at 73.673 kb on - strand at 73.673 kb on - strand at 73.673 kb on - strand at 73.686 kb on + strand at 73.686 kb on + strand at 73.686 kb on + strand at 73.686 kb on + strand at 73.686 kb on + strand at 73.687 kb on - strand at 73.687 kb on - strand at 73.687 kb on - strand at 73.687 kb on - strand at 73.709 kb on + strand at 73.751 kb on + strand at 73.751 kb on + strand at 73.751 kb on + strand at 73.751 kb on + strand at 73.752 kb on - strand at 73.922 kb on + strand, within ABIE53_000065 at 73.922 kb on + strand, within ABIE53_000065 at 73.922 kb on + strand, within ABIE53_000065 at 73.922 kb on + strand, within ABIE53_000065 at 73.922 kb on + strand, within ABIE53_000065 at 73.923 kb on - strand, within ABIE53_000065 at 73.923 kb on - strand, within ABIE53_000065 at 74.017 kb on + strand, within ABIE53_000065 at 74.017 kb on + strand, within ABIE53_000065 at 74.017 kb on + strand, within ABIE53_000065 at 74.017 kb on + strand, within ABIE53_000065 at 74.188 kb on + strand, within ABIE53_000065 at 74.306 kb on + strand, within ABIE53_000065 at 74.306 kb on + strand, within ABIE53_000065 at 74.306 kb on + strand, within ABIE53_000065 at 74.307 kb on - strand, within ABIE53_000065 at 74.340 kb on + strand, within ABIE53_000065 at 74.340 kb on + strand, within ABIE53_000065 at 74.340 kb on + strand, within ABIE53_000065 at 74.340 kb on + strand, within ABIE53_000065 at 74.374 kb on + strand, within ABIE53_000065 at 74.374 kb on + strand, within ABIE53_000065 at 74.456 kb on + strand, within ABIE53_000065 at 74.457 kb on - strand, within ABIE53_000065 at 74.457 kb on - strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.553 kb on - strand, within ABIE53_000065 at 74.769 kb on + strand at 74.769 kb on + strand at 74.769 kb on + strand at 74.769 kb on + strand at 74.769 kb on + strand at 74.769 kb on + strand at 74.769 kb on + strand at 74.770 kb on - strand at 74.770 kb on - strand at 74.858 kb on + strand at 74.858 kb on + strand at 74.858 kb on + strand at 74.858 kb on + strand at 74.859 kb on - strand at 74.859 kb on - strand at 74.859 kb on - strand at 74.915 kb on + strand at 74.916 kb on - strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.945 kb on - strand at 74.945 kb on - strand at 74.945 kb on - strand at 74.945 kb on - strand at 74.966 kb on + strand at 74.966 kb on + strand at 74.967 kb on - strand at 74.990 kb on + strand at 75.028 kb on + strand at 75.028 kb on + strand at 75.076 kb on + strand at 75.077 kb on - strand at 75.077 kb on - strand at 75.077 kb on - strand at 75.148 kb on + strand, within ABIE53_000066 at 75.149 kb on - strand, within ABIE53_000066 at 75.230 kb on + strand, within ABIE53_000066 at 75.409 kb on + strand, within ABIE53_000066 at 75.409 kb on + strand, within ABIE53_000066 at 75.409 kb on + strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.605 kb on - strand, within ABIE53_000066 at 75.605 kb on - strand, within ABIE53_000066 at 75.605 kb on - strand, within ABIE53_000066 at 75.605 kb on - strand, within ABIE53_000066 at 75.605 kb on - strand, within ABIE53_000066
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 72,911 + ABIE53_000064 0.23 -0.8 72,911 + ABIE53_000064 0.23 -0.5 72,911 + ABIE53_000064 0.23 +0.3 72,912 - ABIE53_000064 0.23 +1.2 72,938 + ABIE53_000064 0.26 -1.0 72,939 - ABIE53_000064 0.26 -0.3 72,939 - ABIE53_000064 0.26 +0.7 73,073 + ABIE53_000064 0.43 -1.0 73,073 + ABIE53_000064 0.43 +1.8 73,073 + ABIE53_000064 0.43 -0.7 73,074 - ABIE53_000064 0.43 +2.3 73,074 - ABIE53_000064 0.43 -0.7 73,074 - ABIE53_000064 0.43 +3.1 73,074 - ABIE53_000064 0.43 -1.2 73,074 - ABIE53_000064 0.43 +2.5 73,074 - ABIE53_000064 0.43 -0.1 73,178 + ABIE53_000064 0.55 +0.2 73,178 + ABIE53_000064 0.55 -0.1 73,178 + ABIE53_000064 0.55 +2.0 73,179 - ABIE53_000064 0.55 +4.0 73,179 - ABIE53_000064 0.55 -2.4 73,214 + ABIE53_000064 0.60 -2.5 73,215 - ABIE53_000064 0.60 -1.2 73,259 + ABIE53_000064 0.65 +0.5 73,259 + ABIE53_000064 0.65 +2.3 73,259 + ABIE53_000064 0.65 +2.3 73,259 + ABIE53_000064 0.65 +0.7 73,259 + ABIE53_000064 0.65 +0.6 73,260 - ABIE53_000064 0.65 +1.4 73,260 - ABIE53_000064 0.65 +1.3 73,260 - ABIE53_000064 0.65 -1.5 73,260 - ABIE53_000064 0.65 -0.5 73,260 - ABIE53_000064 0.65 -0.0 73,260 - ABIE53_000064 0.65 -0.5 73,260 - ABIE53_000064 0.65 +0.2 73,388 + ABIE53_000064 0.81 -0.9 73,388 + ABIE53_000064 0.81 -0.3 73,388 + ABIE53_000064 0.81 -0.5 73,389 - ABIE53_000064 0.81 -0.6 73,389 - ABIE53_000064 0.81 -0.9 73,389 - ABIE53_000064 0.81 +0.2 73,474 - +0.1 73,474 - -0.1 73,508 + +0.6 73,508 + +0.1 73,508 + -0.0 73,508 + +0.6 73,509 - +0.4 73,509 - -0.5 73,509 - -1.4 73,509 - -2.1 73,509 - -2.2 73,509 - +0.9 73,509 - -2.0 73,518 + -2.3 73,518 + +1.6 73,519 - +0.7 73,530 + +2.1 73,530 + -1.4 73,530 + -0.7 73,530 + -1.1 73,530 + -0.5 73,530 + -0.4 73,530 + +2.3 73,531 - -2.0 73,531 - -0.1 73,531 - +1.3 73,531 - +1.7 73,590 + -2.2 73,590 + -0.9 73,590 + -0.3 73,590 + +0.7 73,590 + -2.0 73,591 - -0.5 73,591 - +1.2 73,591 - +0.8 73,619 + -0.9 73,619 + -0.3 73,619 + -0.2 73,619 + +0.8 73,620 - +0.2 73,620 - +1.0 73,620 - -0.3 73,620 - -2.0 73,620 - +1.0 73,622 + +2.1 73,622 + +1.0 73,623 - +0.6 73,623 - +1.4 73,672 + -2.1 73,672 + -0.3 73,672 + -1.3 73,673 - -0.7 73,673 - -0.5 73,673 - +3.3 73,673 - -1.6 73,673 - +4.3 73,686 + -0.5 73,686 + -0.5 73,686 + +1.5 73,686 + -2.5 73,686 + -0.2 73,687 - +0.3 73,687 - +0.2 73,687 - +2.3 73,687 - +0.9 73,709 + +0.0 73,751 + -0.5 73,751 + -0.1 73,751 + +4.7 73,751 + +0.3 73,752 - +0.1 73,922 + ABIE53_000065 0.20 +0.4 73,922 + ABIE53_000065 0.20 +0.7 73,922 + ABIE53_000065 0.20 -0.4 73,922 + ABIE53_000065 0.20 -1.8 73,922 + ABIE53_000065 0.20 -0.6 73,923 - ABIE53_000065 0.20 -1.2 73,923 - ABIE53_000065 0.20 +0.9 74,017 + ABIE53_000065 0.30 +0.3 74,017 + ABIE53_000065 0.30 -1.4 74,017 + ABIE53_000065 0.30 -1.1 74,017 + ABIE53_000065 0.30 +0.2 74,188 + ABIE53_000065 0.48 -2.7 74,306 + ABIE53_000065 0.61 -1.5 74,306 + ABIE53_000065 0.61 +1.3 74,306 + ABIE53_000065 0.61 -1.6 74,307 - ABIE53_000065 0.61 +2.5 74,340 + ABIE53_000065 0.64 -2.1 74,340 + ABIE53_000065 0.64 +0.7 74,340 + ABIE53_000065 0.64 -1.4 74,340 + ABIE53_000065 0.64 +0.3 74,374 + ABIE53_000065 0.68 -0.5 74,374 + ABIE53_000065 0.68 -0.1 74,456 + ABIE53_000065 0.76 +0.8 74,457 - ABIE53_000065 0.76 +0.3 74,457 - ABIE53_000065 0.76 +0.4 74,552 + ABIE53_000065 0.86 -0.4 74,552 + ABIE53_000065 0.86 -0.3 74,552 + ABIE53_000065 0.86 +0.6 74,552 + ABIE53_000065 0.86 -0.6 74,552 + ABIE53_000065 0.86 -1.0 74,552 + ABIE53_000065 0.86 -4.4 74,553 - ABIE53_000065 0.87 +0.5 74,769 + -1.3 74,769 + -0.3 74,769 + -0.7 74,769 + -0.4 74,769 + -0.8 74,769 + +0.9 74,769 + +0.0 74,770 - -1.4 74,770 - +0.5 74,858 + -2.2 74,858 + -2.8 74,858 + +0.7 74,858 + -2.2 74,859 - +0.1 74,859 - -0.9 74,859 - -0.9 74,915 + -1.0 74,916 - +0.4 74,944 + -0.5 74,944 + +2.3 74,944 + -3.1 74,944 + +0.4 74,944 + +0.7 74,944 + -0.1 74,944 + +1.8 74,945 - +0.4 74,945 - -0.7 74,945 - +0.1 74,945 - +0.1 74,966 + -1.2 74,966 + -0.3 74,967 - +0.5 74,990 + -0.4 75,028 + +2.7 75,028 + +1.0 75,076 + +0.1 75,077 - +0.3 75,077 - -1.1 75,077 - -1.9 75,148 + ABIE53_000066 0.11 -2.2 75,149 - ABIE53_000066 0.11 -2.3 75,230 + ABIE53_000066 0.15 +0.9 75,409 + ABIE53_000066 0.25 -0.8 75,409 + ABIE53_000066 0.25 +0.3 75,409 + ABIE53_000066 0.25 +0.4 75,410 - ABIE53_000066 0.25 +0.6 75,410 - ABIE53_000066 0.25 -0.9 75,410 - ABIE53_000066 0.25 -2.0 75,410 - ABIE53_000066 0.25 +2.4 75,410 - ABIE53_000066 0.25 -1.2 75,410 - ABIE53_000066 0.25 -1.3 75,410 - ABIE53_000066 0.25 +0.5 75,410 - ABIE53_000066 0.25 -1.0 75,410 - ABIE53_000066 0.25 -3.1 75,410 - ABIE53_000066 0.25 -0.3 75,604 + ABIE53_000066 0.35 +0.2 75,604 + ABIE53_000066 0.35 -2.2 75,604 + ABIE53_000066 0.35 +2.3 75,604 + ABIE53_000066 0.35 -0.5 75,604 + ABIE53_000066 0.35 +2.3 75,604 + ABIE53_000066 0.35 -0.1 75,605 - ABIE53_000066 0.35 -1.1 75,605 - ABIE53_000066 0.35 +0.9 75,605 - ABIE53_000066 0.35 +1.2 75,605 - ABIE53_000066 0.35 +0.2 75,605 - ABIE53_000066 0.35 +0.2
Or see this region's nucleotide sequence