Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22330

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,366,694	+		ABZR87_RS22320	0.83	-0.7
1,366,695	-		ABZR87_RS22320	0.83	-0.2
1,366,701	+		ABZR87_RS22320	0.84	+0.0
1,366,701	+		ABZR87_RS22320	0.84	+0.8
1,366,701	+		ABZR87_RS22320	0.84	-1.0
1,366,797	+				-0.7
1,366,797	+				-0.2
1,366,797	+				+0.4
1,366,798	-				-0.5
1,366,798	-				+1.2
1,366,798	-				-0.2
1,366,798	-				+0.6
1,366,798	-				-2.1
1,366,798	-				+1.5
1,366,828	+				+1.3
1,366,828	+				-0.2
1,366,828	+				+0.5
1,366,829	-				+1.5
1,366,830	+				-0.4
1,366,830	+				+0.3
1,366,830	+				-0.0
1,366,830	+				+0.2
1,366,830	+				-1.7
1,366,830	+				+0.9
1,366,830	+				-1.5
1,366,831	-				-1.0
1,366,831	-				+1.6
1,366,831	-				+0.2
1,367,017	+		ABZR87_RS22325	0.31	+0.8
1,367,018	-		ABZR87_RS22325	0.32	+0.3
1,367,018	-		ABZR87_RS22325	0.32	+0.0
1,367,098	+		ABZR87_RS22325	0.59	-1.1
1,367,099	-		ABZR87_RS22325	0.59	-0.4
1,367,099	-		ABZR87_RS22325	0.59	+0.2
1,367,206	+				-0.4
1,367,206	+				-3.1
1,367,206	+				+0.1
1,367,206	+				-0.1
1,367,206	+				-0.2
1,367,206	+				-0.1
1,367,206	+				+0.2
1,367,206	+				+0.1
1,367,207	-				-0.9
1,367,207	-				+0.3
1,367,207	-				-0.5
1,367,207	-				-2.1
1,367,207	-				+0.2
1,367,207	-				-0.2
1,367,229	+				-0.2
1,367,266	-				-0.9
1,367,406	+				-0.6
1,367,407	-				-0.8
1,367,411	+				-0.4
1,367,428	+				-0.7
1,367,429	-				-2.5
1,367,438	+				-0.3
1,367,438	+				-0.4
1,367,439	-				-1.2
1,367,439	-				+0.2
1,367,467	+				+1.9
1,367,467	+				+0.1
1,367,467	+				-0.0
1,367,467	+				-0.2
1,367,468	-				-0.6
1,367,468	-				+0.3
1,367,468	-				-0.2
1,367,542	+				-0.2
1,367,542	+				+0.0
1,367,543	-				-1.5
1,367,628	-				-1.4
1,367,628	-				-0.7
1,367,704	+				+1.1
1,367,704	+				+0.6
1,367,705	-				-0.1
1,367,705	-				-0.2
1,367,707	+				-0.6
1,367,707	+				-0.8
1,367,707	+				+0.8
1,367,708	-				-0.8
1,367,708	-				+0.0
1,367,800	+		ABZR87_RS22330	0.34	-0.0
1,367,800	+		ABZR87_RS22330	0.34	-1.0
1,367,934	+		ABZR87_RS22330	0.71	-0.1
1,367,934	+		ABZR87_RS22330	0.71	-1.2
1,367,934	+		ABZR87_RS22330	0.71	-0.9
1,367,934	+		ABZR87_RS22330	0.71	+0.9
1,367,935	-		ABZR87_RS22330	0.72	-1.1
1,368,135	+				-0.7
1,368,135	+				+0.2
1,368,136	-				-0.5
1,368,152	+				-0.5
1,368,152	+				+1.6
1,368,152	+				-0.2
1,368,152	+				+0.5
1,368,152	+				+0.6
1,368,152	+				+0.1
1,368,153	-				-0.6
1,368,153	-				-1.0
1,368,153	-				-0.8
1,368,153	-				-0.7
1,368,227	+				-1.0
1,368,227	+				+1.1
1,368,227	+				-2.0
1,368,227	+				-0.2
1,368,227	+				-1.7
1,368,227	+				+0.1
1,368,227	+				+1.5
1,368,227	+				+0.1
1,368,227	+				+1.1
1,368,227	+				+0.4
1,368,227	+				+1.9
1,368,228	-				-1.4
1,368,228	-				+0.1
1,368,228	-				-0.1
1,368,228	-				+0.6
1,368,525	+		ABZR87_RS22335	0.13	-1.2
1,368,526	-		ABZR87_RS22335	0.13	+0.3
1,368,764	+		ABZR87_RS22335	0.22	+1.1
1,368,764	+		ABZR87_RS22335	0.22	-0.3
1,368,764	+		ABZR87_RS22335	0.22	-1.7
1,368,764	+		ABZR87_RS22335	0.22	+0.4
1,368,764	+		ABZR87_RS22335	0.22	-0.7
1,368,765	-		ABZR87_RS22335	0.22	+0.1
1,368,765	-		ABZR87_RS22335	0.22	+1.0
1,368,765	-		ABZR87_RS22335	0.22	+1.0
1,368,981	+		ABZR87_RS22335	0.30	+1.1
1,368,981	+		ABZR87_RS22335	0.30	+0.5
1,368,982	-		ABZR87_RS22335	0.30	+0.6
1,368,982	-		ABZR87_RS22335	0.30	-0.3