Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21835

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21825 and ABZR87_RS21830 overlap by 17 nucleotidesABZR87_RS21830 and ABZR87_RS21835 overlap by 11 nucleotidesABZR87_RS21835 and ABZR87_RS21840 overlap by 4 nucleotidesABZR87_RS21840 and ABZR87_RS21845 are separated by 16 nucleotides ABZR87_RS21825: ABZR87_RS21825 - metalloregulator ArsR/SmtB family transcription factor, at 1,279,607 to 1,279,963 _RS21825 ABZR87_RS21830: ABZR87_RS21830 - SRPBCC family protein, at 1,279,947 to 1,280,909 _RS21830 ABZR87_RS21835: ABZR87_RS21835 - hypothetical protein, at 1,280,899 to 1,281,024 _RS21835 ABZR87_RS21840: ABZR87_RS21840 - DUF4865 family protein, at 1,281,021 to 1,281,587 _RS21840 ABZR87_RS21845: ABZR87_RS21845 - tautomerase family protein, at 1,281,604 to 1,281,996 _RS21845 Position (kb) 1280 1281 1282Strain fitness (log2 ratio) -2 -1 0 1 2at 1279.913 kb on + strand, within ABZR87_RS21825at 1279.913 kb on + strand, within ABZR87_RS21825at 1279.914 kb on - strand, within ABZR87_RS21825at 1279.914 kb on - strand, within ABZR87_RS21825at 1279.914 kb on - strand, within ABZR87_RS21825at 1280.572 kb on - strand, within ABZR87_RS21830at 1280.703 kb on + strand, within ABZR87_RS21830at 1280.703 kb on + strand, within ABZR87_RS21830at 1280.703 kb on + strand, within ABZR87_RS21830at 1280.704 kb on - strand, within ABZR87_RS21830at 1280.704 kb on - strand, within ABZR87_RS21830at 1280.709 kb on + strand, within ABZR87_RS21830at 1280.709 kb on + strand, within ABZR87_RS21830at 1280.709 kb on + strand, within ABZR87_RS21830at 1280.709 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.835 kb on + strandat 1280.835 kb on + strandat 1280.996 kb on + strand, within ABZR87_RS21835at 1280.996 kb on + strand, within ABZR87_RS21835at 1280.996 kb on + strand, within ABZR87_RS21835at 1280.996 kb on + strand, within ABZR87_RS21835at 1280.997 kb on - strand, within ABZR87_RS21835at 1280.997 kb on - strand, within ABZR87_RS21835at 1281.409 kb on + strand, within ABZR87_RS21840at 1281.409 kb on + strand, within ABZR87_RS21840at 1281.409 kb on + strand, within ABZR87_RS21840at 1281.410 kb on - strand, within ABZR87_RS21840at 1281.547 kb on + strandat 1281.548 kb on - strandat 1281.571 kb on + strandat 1281.571 kb on + strandat 1281.571 kb on + strandat 1281.571 kb on + strandat 1281.572 kb on - strandat 1281.572 kb on - strandat 1281.623 kb on + strandat 1281.624 kb on - strandat 1281.671 kb on - strand, within ABZR87_RS21845at 1281.671 kb on - strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.686 kb on - strand, within ABZR87_RS21845at 1281.686 kb on - strand, within ABZR87_RS21845at 1281.827 kb on + strand, within ABZR87_RS21845at 1281.827 kb on + strand, within ABZR87_RS21845at 1281.827 kb on + strand, within ABZR87_RS21845at 1281.828 kb on - strand, within ABZR87_RS21845at 1281.923 kb on + strand, within ABZR87_RS21845at 1281.950 kb on + strand, within ABZR87_RS21845at 1281.951 kb on - strand, within ABZR87_RS21845

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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1,279,913 + ABZR87_RS21825 0.86 -0.0
1,279,913 + ABZR87_RS21825 0.86 -0.0
1,279,914 - ABZR87_RS21825 0.86 +0.0
1,279,914 - ABZR87_RS21825 0.86 +0.5
1,279,914 - ABZR87_RS21825 0.86 -0.4
1,280,572 - ABZR87_RS21830 0.65 +2.1
1,280,703 + ABZR87_RS21830 0.79 +0.0
1,280,703 + ABZR87_RS21830 0.79 +0.8
1,280,703 + ABZR87_RS21830 0.79 +0.9
1,280,704 - ABZR87_RS21830 0.79 -0.7
1,280,704 - ABZR87_RS21830 0.79 +0.2
1,280,709 + ABZR87_RS21830 0.79 -0.4
1,280,709 + ABZR87_RS21830 0.79 +0.1
1,280,709 + ABZR87_RS21830 0.79 +0.1
1,280,709 - ABZR87_RS21830 0.79 +0.3
1,280,710 - ABZR87_RS21830 0.79 +0.9
1,280,710 - ABZR87_RS21830 0.79 +0.0
1,280,710 - ABZR87_RS21830 0.79 +0.2
1,280,710 - ABZR87_RS21830 0.79 -0.1
1,280,835 + +0.5
1,280,835 + +0.1
1,280,996 + ABZR87_RS21835 0.77 +0.4
1,280,996 + ABZR87_RS21835 0.77 +1.9
1,280,996 + ABZR87_RS21835 0.77 +0.3
1,280,996 + ABZR87_RS21835 0.77 -1.0
1,280,997 - ABZR87_RS21835 0.78 +0.8
1,280,997 - ABZR87_RS21835 0.78 +1.2
1,281,409 + ABZR87_RS21840 0.68 -0.4
1,281,409 + ABZR87_RS21840 0.68 +0.3
1,281,409 + ABZR87_RS21840 0.68 +0.1
1,281,410 - ABZR87_RS21840 0.69 -0.1
1,281,547 + -0.5
1,281,548 - +0.7
1,281,571 + +0.4
1,281,571 + +1.2
1,281,571 + -0.2
1,281,571 + +1.2
1,281,572 - +1.7
1,281,572 - -0.5
1,281,623 + -0.0
1,281,624 - -0.9
1,281,671 - ABZR87_RS21845 0.17 +0.3
1,281,671 - ABZR87_RS21845 0.17 +0.4
1,281,685 + ABZR87_RS21845 0.21 -0.9
1,281,685 + ABZR87_RS21845 0.21 -0.2
1,281,685 + ABZR87_RS21845 0.21 +1.0
1,281,685 + ABZR87_RS21845 0.21 -0.0
1,281,685 + ABZR87_RS21845 0.21 +0.5
1,281,685 + ABZR87_RS21845 0.21 -2.2
1,281,685 + ABZR87_RS21845 0.21 -0.2
1,281,685 + ABZR87_RS21845 0.21 +0.2
1,281,685 + ABZR87_RS21845 0.21 -0.1
1,281,686 - ABZR87_RS21845 0.21 -0.2
1,281,686 - ABZR87_RS21845 0.21 +0.5
1,281,827 + ABZR87_RS21845 0.57 -0.2
1,281,827 + ABZR87_RS21845 0.57 -1.3
1,281,827 + ABZR87_RS21845 0.57 +0.7
1,281,828 - ABZR87_RS21845 0.57 +0.8
1,281,923 + ABZR87_RS21845 0.81 +0.3
1,281,950 + ABZR87_RS21845 0.88 -0.2
1,281,951 - ABZR87_RS21845 0.88 +0.1

Or see this region's nucleotide sequence