Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21735

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21730 and ABZR87_RS21735 are separated by 9 nucleotidesABZR87_RS21735 and ABZR87_RS21740 are separated by 252 nucleotides ABZR87_RS21730: ABZR87_RS21730 - heavy metal sensor histidine kinase, at 1,259,784 to 1,261,226 _RS21730 ABZR87_RS21735: ABZR87_RS21735 - DUF2917 domain-containing protein, at 1,261,236 to 1,261,598 _RS21735 ABZR87_RS21740: ABZR87_RS21740 - TauD/TfdA family dioxygenase, at 1,261,851 to 1,262,807 _RS21740 Position (kb) 1261 1262Strain fitness (log2 ratio) -1 0 1at 1260.306 kb on + strand, within ABZR87_RS21730at 1260.306 kb on + strand, within ABZR87_RS21730at 1260.307 kb on - strand, within ABZR87_RS21730at 1260.648 kb on + strand, within ABZR87_RS21730at 1260.649 kb on - strand, within ABZR87_RS21730at 1260.681 kb on + strand, within ABZR87_RS21730at 1260.681 kb on + strand, within ABZR87_RS21730at 1260.682 kb on - strand, within ABZR87_RS21730at 1260.801 kb on + strand, within ABZR87_RS21730at 1261.266 kb on - strandat 1261.331 kb on + strand, within ABZR87_RS21735at 1261.778 kb on - strandat 1261.816 kb on + strandat 1261.816 kb on + strandat 1261.816 kb on + strandat 1261.817 kb on - strandat 1261.903 kb on + strandat 1261.922 kb on + strandat 1261.923 kb on - strandat 1261.989 kb on + strand, within ABZR87_RS21740at 1262.007 kb on + strand, within ABZR87_RS21740at 1262.007 kb on + strand, within ABZR87_RS21740at 1262.007 kb on + strand, within ABZR87_RS21740at 1262.008 kb on - strand, within ABZR87_RS21740at 1262.008 kb on - strand, within ABZR87_RS21740at 1262.008 kb on - strand, within ABZR87_RS21740at 1262.008 kb on - strand, within ABZR87_RS21740at 1262.283 kb on + strand, within ABZR87_RS21740at 1262.283 kb on + strand, within ABZR87_RS21740at 1262.347 kb on - strand, within ABZR87_RS21740at 1262.349 kb on + strand, within ABZR87_RS21740at 1262.349 kb on + strand, within ABZR87_RS21740at 1262.349 kb on + strand, within ABZR87_RS21740at 1262.350 kb on - strand, within ABZR87_RS21740at 1262.350 kb on - strand, within ABZR87_RS21740at 1262.350 kb on - strand, within ABZR87_RS21740at 1262.355 kb on + strand, within ABZR87_RS21740at 1262.427 kb on + strand, within ABZR87_RS21740at 1262.427 kb on + strand, within ABZR87_RS21740at 1262.427 kb on + strand, within ABZR87_RS21740at 1262.428 kb on - strand, within ABZR87_RS21740at 1262.428 kb on - strand, within ABZR87_RS21740

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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1,260,306 + ABZR87_RS21730 0.36 +0.6
1,260,306 + ABZR87_RS21730 0.36 -0.5
1,260,307 - ABZR87_RS21730 0.36 +0.1
1,260,648 + ABZR87_RS21730 0.60 -0.4
1,260,649 - ABZR87_RS21730 0.60 -0.5
1,260,681 + ABZR87_RS21730 0.62 +1.6
1,260,681 + ABZR87_RS21730 0.62 -0.1
1,260,682 - ABZR87_RS21730 0.62 +0.1
1,260,801 + ABZR87_RS21730 0.70 +0.2
1,261,266 - -0.0
1,261,331 + ABZR87_RS21735 0.26 +0.4
1,261,778 - +0.3
1,261,816 + +0.2
1,261,816 + +0.8
1,261,816 + -0.1
1,261,817 - -0.1
1,261,903 + +0.2
1,261,922 + +0.8
1,261,923 - +0.0
1,261,989 + ABZR87_RS21740 0.14 -0.2
1,262,007 + ABZR87_RS21740 0.16 +0.4
1,262,007 + ABZR87_RS21740 0.16 -0.5
1,262,007 + ABZR87_RS21740 0.16 +1.5
1,262,008 - ABZR87_RS21740 0.16 +0.3
1,262,008 - ABZR87_RS21740 0.16 +0.3
1,262,008 - ABZR87_RS21740 0.16 -0.9
1,262,008 - ABZR87_RS21740 0.16 -0.2
1,262,283 + ABZR87_RS21740 0.45 -0.1
1,262,283 + ABZR87_RS21740 0.45 -0.0
1,262,347 - ABZR87_RS21740 0.52 +0.1
1,262,349 + ABZR87_RS21740 0.52 -0.2
1,262,349 + ABZR87_RS21740 0.52 -0.1
1,262,349 + ABZR87_RS21740 0.52 +1.0
1,262,350 - ABZR87_RS21740 0.52 +0.8
1,262,350 - ABZR87_RS21740 0.52 +0.7
1,262,350 - ABZR87_RS21740 0.52 -1.2
1,262,355 + ABZR87_RS21740 0.53 -0.2
1,262,427 + ABZR87_RS21740 0.60 -1.1
1,262,427 + ABZR87_RS21740 0.60 -0.2
1,262,427 + ABZR87_RS21740 0.60 +0.8
1,262,428 - ABZR87_RS21740 0.60 +0.6
1,262,428 - ABZR87_RS21740 0.60 +1.0

Or see this region's nucleotide sequence