Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20300

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20295 and ABZR87_RS20300 are separated by 255 nucleotidesABZR87_RS20300 and ABZR87_RS20305 are separated by 21 nucleotides ABZR87_RS20295: ABZR87_RS20295 - MHYT domain-containing protein, at 941,838 to 942,623 _RS20295 ABZR87_RS20300: ABZR87_RS20300 - hypothetical protein, at 942,879 to 943,460 _RS20300 ABZR87_RS20305: ABZR87_RS20305 - MFS transporter, at 943,482 to 944,783 _RS20305 Position (kb) 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 941.986 kb on + strand, within ABZR87_RS20295at 941.987 kb on - strand, within ABZR87_RS20295at 941.987 kb on - strand, within ABZR87_RS20295at 941.987 kb on - strand, within ABZR87_RS20295at 941.987 kb on - strand, within ABZR87_RS20295at 941.987 kb on - strand, within ABZR87_RS20295at 941.987 kb on - strand, within ABZR87_RS20295at 941.987 kb on - strand, within ABZR87_RS20295at 942.031 kb on + strand, within ABZR87_RS20295at 942.032 kb on - strand, within ABZR87_RS20295at 942.032 kb on - strand, within ABZR87_RS20295at 942.217 kb on + strand, within ABZR87_RS20295at 942.217 kb on + strand, within ABZR87_RS20295at 942.217 kb on + strand, within ABZR87_RS20295at 942.217 kb on + strand, within ABZR87_RS20295at 942.218 kb on - strand, within ABZR87_RS20295at 942.218 kb on - strand, within ABZR87_RS20295at 942.218 kb on - strand, within ABZR87_RS20295at 942.391 kb on + strand, within ABZR87_RS20295at 942.523 kb on + strand, within ABZR87_RS20295at 942.523 kb on + strand, within ABZR87_RS20295at 942.524 kb on - strand, within ABZR87_RS20295at 942.524 kb on - strand, within ABZR87_RS20295at 942.524 kb on - strand, within ABZR87_RS20295at 942.547 kb on + strandat 942.548 kb on - strandat 942.574 kb on + strandat 942.575 kb on - strandat 942.575 kb on - strandat 942.575 kb on - strandat 942.575 kb on - strandat 942.575 kb on - strandat 942.575 kb on - strandat 942.575 kb on - strandat 942.580 kb on + strandat 942.581 kb on - strandat 942.616 kb on + strandat 942.639 kb on + strandat 942.640 kb on - strandat 942.640 kb on - strandat 942.642 kb on + strandat 942.764 kb on + strandat 942.764 kb on + strandat 942.764 kb on + strandat 942.764 kb on + strandat 942.765 kb on - strandat 942.765 kb on - strandat 942.801 kb on + strandat 942.801 kb on + strandat 942.801 kb on + strandat 942.801 kb on + strandat 942.802 kb on - strandat 942.802 kb on - strandat 942.806 kb on - strandat 942.850 kb on + strandat 943.185 kb on + strand, within ABZR87_RS20300at 943.185 kb on + strand, within ABZR87_RS20300at 943.185 kb on + strand, within ABZR87_RS20300at 943.186 kb on - strand, within ABZR87_RS20300at 943.186 kb on - strand, within ABZR87_RS20300at 943.188 kb on - strand, within ABZR87_RS20300at 943.542 kb on - strandat 943.542 kb on - strandat 943.616 kb on - strand, within ABZR87_RS20305at 943.616 kb on - strand, within ABZR87_RS20305at 943.672 kb on + strand, within ABZR87_RS20305at 943.673 kb on - strand, within ABZR87_RS20305at 943.744 kb on + strand, within ABZR87_RS20305at 943.744 kb on + strand, within ABZR87_RS20305at 943.744 kb on + strand, within ABZR87_RS20305at 943.744 kb on + strand, within ABZR87_RS20305at 943.745 kb on - strand, within ABZR87_RS20305at 943.745 kb on - strand, within ABZR87_RS20305at 943.807 kb on + strand, within ABZR87_RS20305at 943.807 kb on + strand, within ABZR87_RS20305at 943.808 kb on - strand, within ABZR87_RS20305at 943.883 kb on - strand, within ABZR87_RS20305at 944.006 kb on + strand, within ABZR87_RS20305at 944.006 kb on + strand, within ABZR87_RS20305at 944.007 kb on - strand, within ABZR87_RS20305at 944.007 kb on - strand, within ABZR87_RS20305at 944.026 kb on + strand, within ABZR87_RS20305at 944.027 kb on - strand, within ABZR87_RS20305at 944.042 kb on - strand, within ABZR87_RS20305at 944.042 kb on - strand, within ABZR87_RS20305at 944.042 kb on - strand, within ABZR87_RS20305at 944.182 kb on + strand, within ABZR87_RS20305at 944.182 kb on + strand, within ABZR87_RS20305at 944.182 kb on + strand, within ABZR87_RS20305at 944.182 kb on + strand, within ABZR87_RS20305at 944.182 kb on + strand, within ABZR87_RS20305at 944.230 kb on + strand, within ABZR87_RS20305at 944.231 kb on - strand, within ABZR87_RS20305

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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941,986 + ABZR87_RS20295 0.19 -0.7
941,987 - ABZR87_RS20295 0.19 +1.2
941,987 - ABZR87_RS20295 0.19 +1.1
941,987 - ABZR87_RS20295 0.19 +0.0
941,987 - ABZR87_RS20295 0.19 +0.5
941,987 - ABZR87_RS20295 0.19 -0.3
941,987 - ABZR87_RS20295 0.19 -0.5
941,987 - ABZR87_RS20295 0.19 -0.6
942,031 + ABZR87_RS20295 0.25 -1.3
942,032 - ABZR87_RS20295 0.25 +0.6
942,032 - ABZR87_RS20295 0.25 -0.1
942,217 + ABZR87_RS20295 0.48 -1.2
942,217 + ABZR87_RS20295 0.48 -0.8
942,217 + ABZR87_RS20295 0.48 -2.1
942,217 + ABZR87_RS20295 0.48 +0.6
942,218 - ABZR87_RS20295 0.48 +0.1
942,218 - ABZR87_RS20295 0.48 +0.8
942,218 - ABZR87_RS20295 0.48 -0.0
942,391 + ABZR87_RS20295 0.70 -0.7
942,523 + ABZR87_RS20295 0.87 -0.3
942,523 + ABZR87_RS20295 0.87 -1.1
942,524 - ABZR87_RS20295 0.87 -1.0
942,524 - ABZR87_RS20295 0.87 -0.5
942,524 - ABZR87_RS20295 0.87 -0.0
942,547 + -2.9
942,548 - +0.1
942,574 + -1.1
942,575 - -0.2
942,575 - +0.4
942,575 - +0.6
942,575 - -0.1
942,575 - +1.2
942,575 - -0.1
942,575 - +0.3
942,580 + -0.6
942,581 - -0.1
942,616 + +1.4
942,639 + -1.0
942,640 - +0.1
942,640 - +1.4
942,642 + +0.6
942,764 + +0.3
942,764 + -0.2
942,764 + -0.3
942,764 + +1.0
942,765 - -0.0
942,765 - +0.6
942,801 + -0.2
942,801 + +1.8
942,801 + +0.3
942,801 + +0.4
942,802 - +0.1
942,802 - -0.1
942,806 - -0.5
942,850 + +0.1
943,185 + ABZR87_RS20300 0.53 -0.7
943,185 + ABZR87_RS20300 0.53 -1.0
943,185 + ABZR87_RS20300 0.53 -0.7
943,186 - ABZR87_RS20300 0.53 -0.6
943,186 - ABZR87_RS20300 0.53 -0.3
943,188 - ABZR87_RS20300 0.53 -0.0
943,542 - -1.1
943,542 - +0.0
943,616 - ABZR87_RS20305 0.10 +1.5
943,616 - ABZR87_RS20305 0.10 +0.0
943,672 + ABZR87_RS20305 0.15 -1.1
943,673 - ABZR87_RS20305 0.15 -0.6
943,744 + ABZR87_RS20305 0.20 +0.4
943,744 + ABZR87_RS20305 0.20 +0.6
943,744 + ABZR87_RS20305 0.20 +0.0
943,744 + ABZR87_RS20305 0.20 +0.7
943,745 - ABZR87_RS20305 0.20 -0.3
943,745 - ABZR87_RS20305 0.20 -0.1
943,807 + ABZR87_RS20305 0.25 -0.0
943,807 + ABZR87_RS20305 0.25 +0.4
943,808 - ABZR87_RS20305 0.25 -0.3
943,883 - ABZR87_RS20305 0.31 +1.2
944,006 + ABZR87_RS20305 0.40 -0.9
944,006 + ABZR87_RS20305 0.40 -0.9
944,007 - ABZR87_RS20305 0.40 -1.1
944,007 - ABZR87_RS20305 0.40 -1.1
944,026 + ABZR87_RS20305 0.42 -0.7
944,027 - ABZR87_RS20305 0.42 +0.6
944,042 - ABZR87_RS20305 0.43 -0.7
944,042 - ABZR87_RS20305 0.43 -0.1
944,042 - ABZR87_RS20305 0.43 +1.0
944,182 + ABZR87_RS20305 0.54 +0.4
944,182 + ABZR87_RS20305 0.54 +0.2
944,182 + ABZR87_RS20305 0.54 +0.0
944,182 + ABZR87_RS20305 0.54 +0.6
944,182 + ABZR87_RS20305 0.54 +0.9
944,230 + ABZR87_RS20305 0.57 -0.3
944,231 - ABZR87_RS20305 0.58 +0.3

Or see this region's nucleotide sequence