Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19800 and ABZR87_RS19805 are separated by 81 nucleotides ABZR87_RS19805 and ABZR87_RS19810 are separated by 4 nucleotides ABZR87_RS19810 and ABZR87_RS19815 are separated by 19 nucleotides
ABZR87_RS19800: ABZR87_RS19800 - VOC family protein, at 814,567 to 815,640
_RS19800
ABZR87_RS19805: ABZR87_RS19805 - MFS transporter, at 815,722 to 816,912
_RS19805
ABZR87_RS19810: ABZR87_RS19810 - ThiF family adenylyltransferase, at 816,917 to 817,750
_RS19810
ABZR87_RS19815: ABZR87_RS19815 - MFS transporter, at 817,770 to 819,155
_RS19815
Position (kb)
815
816
817 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 814.731 kb on - strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.790 kb on + strand, within ABZR87_RS19800 at 814.791 kb on - strand, within ABZR87_RS19800 at 814.791 kb on - strand, within ABZR87_RS19800 at 814.793 kb on + strand, within ABZR87_RS19800 at 814.794 kb on - strand, within ABZR87_RS19800 at 814.794 kb on - strand, within ABZR87_RS19800 at 814.952 kb on + strand, within ABZR87_RS19800 at 814.952 kb on + strand, within ABZR87_RS19800 at 814.953 kb on - strand, within ABZR87_RS19800 at 815.064 kb on - strand, within ABZR87_RS19800 at 815.064 kb on - strand, within ABZR87_RS19800 at 815.198 kb on + strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.199 kb on - strand, within ABZR87_RS19800 at 815.271 kb on + strand, within ABZR87_RS19800 at 815.367 kb on - strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800 at 815.420 kb on + strand, within ABZR87_RS19800 at 815.551 kb on + strand at 815.551 kb on + strand at 815.551 kb on + strand at 815.552 kb on - strand at 815.552 kb on - strand at 815.580 kb on + strand at 815.581 kb on - strand at 815.688 kb on + strand at 815.689 kb on - strand at 815.723 kb on + strand at 815.724 kb on - strand at 816.005 kb on + strand, within ABZR87_RS19805 at 816.005 kb on + strand, within ABZR87_RS19805 at 816.005 kb on + strand, within ABZR87_RS19805 at 816.005 kb on + strand, within ABZR87_RS19805 at 816.005 kb on + strand, within ABZR87_RS19805 at 816.005 kb on + strand, within ABZR87_RS19805 at 816.005 kb on + strand, within ABZR87_RS19805 at 816.006 kb on - strand, within ABZR87_RS19805 at 816.006 kb on - strand, within ABZR87_RS19805 at 816.168 kb on + strand, within ABZR87_RS19805 at 816.169 kb on - strand, within ABZR87_RS19805 at 816.170 kb on + strand, within ABZR87_RS19805 at 816.170 kb on + strand, within ABZR87_RS19805 at 816.170 kb on + strand, within ABZR87_RS19805 at 816.170 kb on + strand, within ABZR87_RS19805 at 816.170 kb on + strand, within ABZR87_RS19805 at 816.170 kb on + strand, within ABZR87_RS19805 at 816.171 kb on - strand, within ABZR87_RS19805 at 816.171 kb on - strand, within ABZR87_RS19805 at 816.171 kb on - strand, within ABZR87_RS19805 at 816.171 kb on - strand, within ABZR87_RS19805 at 816.171 kb on - strand, within ABZR87_RS19805 at 816.203 kb on + strand, within ABZR87_RS19805 at 816.203 kb on + strand, within ABZR87_RS19805 at 816.204 kb on - strand, within ABZR87_RS19805 at 816.227 kb on + strand, within ABZR87_RS19805 at 816.228 kb on - strand, within ABZR87_RS19805 at 816.228 kb on - strand, within ABZR87_RS19805 at 816.228 kb on - strand, within ABZR87_RS19805 at 816.236 kb on + strand, within ABZR87_RS19805 at 816.236 kb on + strand, within ABZR87_RS19805 at 816.237 kb on - strand, within ABZR87_RS19805 at 816.237 kb on - strand, within ABZR87_RS19805 at 816.237 kb on - strand, within ABZR87_RS19805 at 816.237 kb on - strand, within ABZR87_RS19805 at 816.237 kb on - strand, within ABZR87_RS19805 at 816.278 kb on + strand, within ABZR87_RS19805 at 816.278 kb on + strand, within ABZR87_RS19805 at 816.278 kb on + strand, within ABZR87_RS19805 at 816.278 kb on + strand, within ABZR87_RS19805 at 816.279 kb on - strand, within ABZR87_RS19805 at 816.403 kb on + strand, within ABZR87_RS19805 at 816.404 kb on - strand, within ABZR87_RS19805 at 816.404 kb on - strand, within ABZR87_RS19805 at 816.416 kb on + strand, within ABZR87_RS19805 at 816.417 kb on - strand, within ABZR87_RS19805 at 816.680 kb on + strand, within ABZR87_RS19805 at 816.836 kb on + strand at 816.836 kb on + strand at 816.836 kb on + strand at 816.836 kb on + strand at 816.837 kb on - strand at 816.837 kb on - strand at 816.921 kb on + strand at 816.922 kb on - strand at 817.233 kb on + strand, within ABZR87_RS19810 at 817.287 kb on + strand, within ABZR87_RS19810 at 817.287 kb on + strand, within ABZR87_RS19810 at 817.287 kb on + strand, within ABZR87_RS19810 at 817.288 kb on - strand, within ABZR87_RS19810 at 817.609 kb on - strand, within ABZR87_RS19810 at 817.609 kb on - strand, within ABZR87_RS19810 at 817.677 kb on + strand at 817.677 kb on + strand at 817.677 kb on + strand at 817.677 kb on + strand at 817.678 kb on - strand at 817.804 kb on + strand at 817.805 kb on - strand at 817.805 kb on - strand at 817.864 kb on + strand at 817.864 kb on + strand at 817.864 kb on + strand at 817.864 kb on + strand at 817.865 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 814,731 - ABZR87_RS19800 0.15 -0.0 814,790 + ABZR87_RS19800 0.21 -1.4 814,790 + ABZR87_RS19800 0.21 -0.1 814,790 + ABZR87_RS19800 0.21 -2.8 814,790 + ABZR87_RS19800 0.21 -0.2 814,790 + ABZR87_RS19800 0.21 -0.1 814,790 + ABZR87_RS19800 0.21 -0.3 814,791 - ABZR87_RS19800 0.21 +0.5 814,791 - ABZR87_RS19800 0.21 +0.0 814,793 + ABZR87_RS19800 0.21 +0.8 814,794 - ABZR87_RS19800 0.21 +0.0 814,794 - ABZR87_RS19800 0.21 -0.0 814,952 + ABZR87_RS19800 0.36 +0.3 814,952 + ABZR87_RS19800 0.36 -0.1 814,953 - ABZR87_RS19800 0.36 -1.0 815,064 - ABZR87_RS19800 0.46 +0.6 815,064 - ABZR87_RS19800 0.46 +0.9 815,198 + ABZR87_RS19800 0.59 +0.7 815,199 - ABZR87_RS19800 0.59 -2.0 815,199 - ABZR87_RS19800 0.59 -0.0 815,199 - ABZR87_RS19800 0.59 -0.4 815,199 - ABZR87_RS19800 0.59 -0.8 815,199 - ABZR87_RS19800 0.59 -0.0 815,271 + ABZR87_RS19800 0.66 -0.0 815,367 - ABZR87_RS19800 0.74 -0.7 815,420 + ABZR87_RS19800 0.79 -1.0 815,420 + ABZR87_RS19800 0.79 +0.2 815,420 + ABZR87_RS19800 0.79 -0.1 815,420 + ABZR87_RS19800 0.79 -0.2 815,551 + +0.3 815,551 + +1.3 815,551 + -0.3 815,552 - +0.1 815,552 - +0.3 815,580 + +0.6 815,581 - -0.3 815,688 + -0.3 815,689 - -0.1 815,723 + +0.9 815,724 - -2.2 816,005 + ABZR87_RS19805 0.24 -0.1 816,005 + ABZR87_RS19805 0.24 +0.8 816,005 + ABZR87_RS19805 0.24 +0.0 816,005 + ABZR87_RS19805 0.24 +0.3 816,005 + ABZR87_RS19805 0.24 +0.1 816,005 + ABZR87_RS19805 0.24 +0.5 816,005 + ABZR87_RS19805 0.24 -1.2 816,006 - ABZR87_RS19805 0.24 -0.1 816,006 - ABZR87_RS19805 0.24 -0.0 816,168 + ABZR87_RS19805 0.37 -0.3 816,169 - ABZR87_RS19805 0.38 -0.9 816,170 + ABZR87_RS19805 0.38 -0.2 816,170 + ABZR87_RS19805 0.38 +1.0 816,170 + ABZR87_RS19805 0.38 +0.8 816,170 + ABZR87_RS19805 0.38 -1.1 816,170 + ABZR87_RS19805 0.38 +0.1 816,170 + ABZR87_RS19805 0.38 +0.2 816,171 - ABZR87_RS19805 0.38 +0.6 816,171 - ABZR87_RS19805 0.38 +0.3 816,171 - ABZR87_RS19805 0.38 -0.1 816,171 - ABZR87_RS19805 0.38 +0.2 816,171 - ABZR87_RS19805 0.38 -0.5 816,203 + ABZR87_RS19805 0.40 +0.9 816,203 + ABZR87_RS19805 0.40 -0.2 816,204 - ABZR87_RS19805 0.40 +0.8 816,227 + ABZR87_RS19805 0.42 -0.2 816,228 - ABZR87_RS19805 0.42 -0.2 816,228 - ABZR87_RS19805 0.42 +2.5 816,228 - ABZR87_RS19805 0.42 +0.9 816,236 + ABZR87_RS19805 0.43 -0.6 816,236 + ABZR87_RS19805 0.43 -1.0 816,237 - ABZR87_RS19805 0.43 +0.2 816,237 - ABZR87_RS19805 0.43 +0.6 816,237 - ABZR87_RS19805 0.43 +0.5 816,237 - ABZR87_RS19805 0.43 -0.1 816,237 - ABZR87_RS19805 0.43 -0.4 816,278 + ABZR87_RS19805 0.47 -0.4 816,278 + ABZR87_RS19805 0.47 -1.4 816,278 + ABZR87_RS19805 0.47 -0.3 816,278 + ABZR87_RS19805 0.47 +0.1 816,279 - ABZR87_RS19805 0.47 +0.1 816,403 + ABZR87_RS19805 0.57 -1.1 816,404 - ABZR87_RS19805 0.57 +0.1 816,404 - ABZR87_RS19805 0.57 +0.6 816,416 + ABZR87_RS19805 0.58 +0.8 816,417 - ABZR87_RS19805 0.58 +0.4 816,680 + ABZR87_RS19805 0.80 +0.1 816,836 + +0.5 816,836 + -0.0 816,836 + +1.0 816,836 + +0.1 816,837 - -0.3 816,837 - -1.8 816,921 + +0.6 816,922 - -0.1 817,233 + ABZR87_RS19810 0.38 -0.4 817,287 + ABZR87_RS19810 0.44 -0.5 817,287 + ABZR87_RS19810 0.44 -0.0 817,287 + ABZR87_RS19810 0.44 +0.2 817,288 - ABZR87_RS19810 0.44 +0.5 817,609 - ABZR87_RS19810 0.83 -1.4 817,609 - ABZR87_RS19810 0.83 +0.4 817,677 + +1.6 817,677 + +0.1 817,677 + +1.0 817,677 + -1.2 817,678 - +1.8 817,804 + -0.2 817,805 - -1.2 817,805 - -0.3 817,864 + +0.4 817,864 + +0.1 817,864 + -0.5 817,864 + +0.5 817,865 - +0.3
Or see this region's nucleotide sequence