Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18655

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18640 and ABZR87_RS18645 are separated by 100 nucleotidesABZR87_RS18645 and ABZR87_RS18650 are separated by 141 nucleotidesABZR87_RS18650 and ABZR87_RS18655 are separated by 81 nucleotidesABZR87_RS18655 and ABZR87_RS18660 overlap by 4 nucleotides ABZR87_RS18640: ABZR87_RS18640 - ATP-dependent helicase, at 534,872 to 537,022 _RS18640 ABZR87_RS18645: ABZR87_RS18645 - hypothetical protein, at 537,123 to 537,449 _RS18645 ABZR87_RS18650: ABZR87_RS18650 - YnfA family protein, at 537,591 to 537,923 _RS18650 ABZR87_RS18655: ABZR87_RS18655 - carbohydrate kinase, at 538,005 to 538,952 _RS18655 ABZR87_RS18660: ABZR87_RS18660 - xylulokinase, at 538,949 to 540,457 _RS18660 Position (kb) 538 539Strain fitness (log2 ratio) -2 -1 0 1at 537.043 kb on - strandat 537.049 kb on - strandat 537.056 kb on + strandat 537.260 kb on + strand, within ABZR87_RS18645at 537.543 kb on + strandat 537.543 kb on + strandat 537.543 kb on + strandat 537.544 kb on - strandat 537.570 kb on + strandat 537.570 kb on + strandat 537.575 kb on - strandat 537.716 kb on + strand, within ABZR87_RS18650at 537.717 kb on - strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.718 kb on + strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.719 kb on - strand, within ABZR87_RS18650at 537.739 kb on + strand, within ABZR87_RS18650at 537.739 kb on + strand, within ABZR87_RS18650at 537.739 kb on + strand, within ABZR87_RS18650at 537.740 kb on - strand, within ABZR87_RS18650at 537.740 kb on - strand, within ABZR87_RS18650at 537.816 kb on + strand, within ABZR87_RS18650at 537.817 kb on - strand, within ABZR87_RS18650at 537.817 kb on - strand, within ABZR87_RS18650at 537.859 kb on + strand, within ABZR87_RS18650at 537.859 kb on + strand, within ABZR87_RS18650at 537.860 kb on - strand, within ABZR87_RS18650at 537.860 kb on - strand, within ABZR87_RS18650at 537.860 kb on - strand, within ABZR87_RS18650at 537.860 kb on - strand, within ABZR87_RS18650at 537.909 kb on - strandat 537.909 kb on - strandat 537.949 kb on + strandat 537.949 kb on + strandat 538.235 kb on + strand, within ABZR87_RS18655at 538.236 kb on - strand, within ABZR87_RS18655at 538.657 kb on + strand, within ABZR87_RS18655at 538.657 kb on + strand, within ABZR87_RS18655at 538.658 kb on - strand, within ABZR87_RS18655at 538.721 kb on - strand, within ABZR87_RS18655at 538.897 kb on + strandat 539.079 kb on + strandat 539.079 kb on + strandat 539.442 kb on + strand, within ABZR87_RS18660at 539.442 kb on + strand, within ABZR87_RS18660at 539.443 kb on - strand, within ABZR87_RS18660at 539.443 kb on - strand, within ABZR87_RS18660at 539.768 kb on + strand, within ABZR87_RS18660at 539.905 kb on + strand, within ABZR87_RS18660at 539.905 kb on + strand, within ABZR87_RS18660at 539.905 kb on + strand, within ABZR87_RS18660at 539.905 kb on + strand, within ABZR87_RS18660at 539.905 kb on + strand, within ABZR87_RS18660at 539.906 kb on - strand, within ABZR87_RS18660at 539.906 kb on - strand, within ABZR87_RS18660at 539.906 kb on - strand, within ABZR87_RS18660at 539.906 kb on - strand, within ABZR87_RS18660

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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537,043 - -0.1
537,049 - +0.9
537,056 + -0.5
537,260 + ABZR87_RS18645 0.42 +0.3
537,543 + +0.8
537,543 + -0.5
537,543 + +0.5
537,544 - -0.3
537,570 + -1.8
537,570 + -0.5
537,575 - +0.9
537,716 + ABZR87_RS18650 0.38 +0.4
537,717 - ABZR87_RS18650 0.38 -0.5
537,718 + ABZR87_RS18650 0.38 -0.5
537,718 + ABZR87_RS18650 0.38 +0.7
537,718 + ABZR87_RS18650 0.38 -0.7
537,718 + ABZR87_RS18650 0.38 -0.3
537,718 + ABZR87_RS18650 0.38 -0.2
537,718 + ABZR87_RS18650 0.38 -1.6
537,718 + ABZR87_RS18650 0.38 +0.9
537,718 + ABZR87_RS18650 0.38 -0.3
537,718 + ABZR87_RS18650 0.38 +0.4
537,718 + ABZR87_RS18650 0.38 -1.0
537,719 - ABZR87_RS18650 0.38 +1.1
537,719 - ABZR87_RS18650 0.38 +0.5
537,719 - ABZR87_RS18650 0.38 +0.1
537,719 - ABZR87_RS18650 0.38 -0.6
537,719 - ABZR87_RS18650 0.38 -0.3
537,719 - ABZR87_RS18650 0.38 -0.1
537,719 - ABZR87_RS18650 0.38 +0.2
537,719 - ABZR87_RS18650 0.38 +1.5
537,719 - ABZR87_RS18650 0.38 -1.8
537,719 - ABZR87_RS18650 0.38 -0.3
537,719 - ABZR87_RS18650 0.38 +1.0
537,719 - ABZR87_RS18650 0.38 -0.0
537,739 + ABZR87_RS18650 0.44 +1.5
537,739 + ABZR87_RS18650 0.44 +0.2
537,739 + ABZR87_RS18650 0.44 -0.3
537,740 - ABZR87_RS18650 0.45 +0.6
537,740 - ABZR87_RS18650 0.45 -0.8
537,816 + ABZR87_RS18650 0.68 -0.5
537,817 - ABZR87_RS18650 0.68 +0.3
537,817 - ABZR87_RS18650 0.68 +1.1
537,859 + ABZR87_RS18650 0.80 +0.6
537,859 + ABZR87_RS18650 0.80 +0.6
537,860 - ABZR87_RS18650 0.81 +0.1
537,860 - ABZR87_RS18650 0.81 +0.2
537,860 - ABZR87_RS18650 0.81 -0.3
537,860 - ABZR87_RS18650 0.81 -0.8
537,909 - -2.6
537,909 - -0.1
537,949 + -1.7
537,949 + +0.5
538,235 + ABZR87_RS18655 0.24 +0.1
538,236 - ABZR87_RS18655 0.24 +0.4
538,657 + ABZR87_RS18655 0.69 -0.2
538,657 + ABZR87_RS18655 0.69 -0.4
538,658 - ABZR87_RS18655 0.69 +0.4
538,721 - ABZR87_RS18655 0.76 +0.3
538,897 + -1.0
539,079 + +0.7
539,079 + -0.3
539,442 + ABZR87_RS18660 0.33 -0.8
539,442 + ABZR87_RS18660 0.33 +0.3
539,443 - ABZR87_RS18660 0.33 +0.8
539,443 - ABZR87_RS18660 0.33 +0.6
539,768 + ABZR87_RS18660 0.54 +0.8
539,905 + ABZR87_RS18660 0.63 +1.6
539,905 + ABZR87_RS18660 0.63 +0.1
539,905 + ABZR87_RS18660 0.63 -0.4
539,905 + ABZR87_RS18660 0.63 +0.6
539,905 + ABZR87_RS18660 0.63 -0.4
539,906 - ABZR87_RS18660 0.63 +0.5
539,906 - ABZR87_RS18660 0.63 +0.9
539,906 - ABZR87_RS18660 0.63 -0.5
539,906 - ABZR87_RS18660 0.63 -0.1

Or see this region's nucleotide sequence