Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17750 and ABZR87_RS17755 are separated by 28 nucleotides ABZR87_RS17755 and ABZR87_RS17760 are separated by 73 nucleotides ABZR87_RS17760 and ABZR87_RS17765 are separated by 65 nucleotides
ABZR87_RS17750: ABZR87_RS17750 - transporter substrate-binding domain-containing protein, at 343,820 to 344,770
_RS17750
ABZR87_RS17755: ABZR87_RS17755 - methionine ABC transporter permease, at 344,799 to 345,443
_RS17755
ABZR87_RS17760: ABZR87_RS17760 - ATP-binding cassette domain-containing protein, at 345,517 to 346,248
_RS17760
ABZR87_RS17765: ABZR87_RS17765 - MetQ/NlpA family lipoprotein, at 346,314 to 347,126
_RS17765
Position (kb) 345
346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.561 kb on + strand, within ABZR87_RS17750 at 344.561 kb on + strand, within ABZR87_RS17750 at 344.915 kb on - strand, within ABZR87_RS17755 at 345.136 kb on - strand, within ABZR87_RS17755 at 345.272 kb on + strand, within ABZR87_RS17755 at 345.273 kb on - strand, within ABZR87_RS17755 at 345.273 kb on - strand, within ABZR87_RS17755 at 345.273 kb on - strand, within ABZR87_RS17755 at 345.282 kb on + strand, within ABZR87_RS17755 at 345.377 kb on - strand, within ABZR87_RS17755 at 345.430 kb on + strand at 345.450 kb on - strand at 345.885 kb on + strand, within ABZR87_RS17760 at 345.886 kb on - strand, within ABZR87_RS17760 at 346.211 kb on + strand at 346.343 kb on - strand at 346.381 kb on + strand at 346.382 kb on - strand at 346.451 kb on - strand, within ABZR87_RS17765 at 346.644 kb on - strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.774 kb on + strand, within ABZR87_RS17765 at 346.787 kb on - strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.818 kb on + strand, within ABZR87_RS17765 at 346.819 kb on - strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 346.834 kb on + strand, within ABZR87_RS17765 at 347.105 kb on - strand at 347.163 kb on + strand at 347.205 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 344,561 + ABZR87_RS17750 0.78 +0.6 344,561 + ABZR87_RS17750 0.78 +0.5 344,915 - ABZR87_RS17755 0.18 +0.6 345,136 - ABZR87_RS17755 0.52 -0.4 345,272 + ABZR87_RS17755 0.73 +0.1 345,273 - ABZR87_RS17755 0.73 +2.1 345,273 - ABZR87_RS17755 0.73 +0.8 345,273 - ABZR87_RS17755 0.73 -0.0 345,282 + ABZR87_RS17755 0.75 -0.1 345,377 - ABZR87_RS17755 0.90 -0.0 345,430 + -0.5 345,450 - +0.6 345,885 + ABZR87_RS17760 0.50 +0.1 345,886 - ABZR87_RS17760 0.50 +0.4 346,211 + +0.2 346,343 - +0.2 346,381 + -0.1 346,382 - +1.6 346,451 - ABZR87_RS17765 0.17 +0.4 346,644 - ABZR87_RS17765 0.41 -0.9 346,774 + ABZR87_RS17765 0.57 +0.1 346,774 + ABZR87_RS17765 0.57 +0.4 346,787 - ABZR87_RS17765 0.58 -0.9 346,818 + ABZR87_RS17765 0.62 -1.3 346,818 + ABZR87_RS17765 0.62 +0.1 346,818 + ABZR87_RS17765 0.62 +0.9 346,819 - ABZR87_RS17765 0.62 +0.0 346,834 + ABZR87_RS17765 0.64 -1.6 346,834 + ABZR87_RS17765 0.64 -1.8 346,834 + ABZR87_RS17765 0.64 -0.9 347,105 - -0.1 347,163 + -2.6 347,205 - -0.2
Or see this region's nucleotide sequence