Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17435 and ABZR87_RS17440 are separated by 134 nucleotides ABZR87_RS17440 and ABZR87_RS17445 overlap by 4 nucleotides
ABZR87_RS17435: ABZR87_RS17435 - LysR family transcriptional regulator, at 270,263 to 271,156
_RS17435
ABZR87_RS17440: ABZR87_RS17440 - (2Fe-2S)-binding protein, at 271,291 to 271,755
_RS17440
ABZR87_RS17445: ABZR87_RS17445 - molybdopterin cofactor-binding domain-containing protein, at 271,752 to 273,956
_RS17445
Position (kb) 271
272 Strain fitness (log2 ratio) -2
-1
0
1 at 270.352 kb on - strand at 270.360 kb on + strand, within ABZR87_RS17435 at 270.360 kb on + strand, within ABZR87_RS17435 at 270.360 kb on + strand, within ABZR87_RS17435 at 270.360 kb on + strand, within ABZR87_RS17435 at 270.361 kb on - strand, within ABZR87_RS17435 at 270.570 kb on + strand, within ABZR87_RS17435 at 270.711 kb on + strand, within ABZR87_RS17435 at 270.712 kb on - strand, within ABZR87_RS17435 at 270.718 kb on - strand, within ABZR87_RS17435 at 270.734 kb on + strand, within ABZR87_RS17435 at 270.735 kb on - strand, within ABZR87_RS17435 at 270.735 kb on - strand, within ABZR87_RS17435 at 270.735 kb on - strand, within ABZR87_RS17435 at 270.735 kb on - strand, within ABZR87_RS17435 at 271.087 kb on + strand at 271.087 kb on + strand at 271.088 kb on - strand at 271.152 kb on + strand at 271.152 kb on + strand at 271.152 kb on + strand at 271.153 kb on - strand at 271.177 kb on + strand at 271.188 kb on - strand at 271.238 kb on + strand at 271.239 kb on - strand at 271.239 kb on - strand at 271.303 kb on - strand at 271.303 kb on - strand at 271.559 kb on + strand, within ABZR87_RS17440 at 271.700 kb on - strand, within ABZR87_RS17440 at 272.067 kb on + strand, within ABZR87_RS17445 at 272.067 kb on + strand, within ABZR87_RS17445 at 272.067 kb on + strand, within ABZR87_RS17445 at 272.068 kb on - strand, within ABZR87_RS17445 at 272.091 kb on + strand, within ABZR87_RS17445 at 272.092 kb on - strand, within ABZR87_RS17445 at 272.092 kb on - strand, within ABZR87_RS17445 at 272.092 kb on - strand, within ABZR87_RS17445 at 272.092 kb on - strand, within ABZR87_RS17445 at 272.127 kb on + strand, within ABZR87_RS17445 at 272.127 kb on + strand, within ABZR87_RS17445 at 272.265 kb on + strand, within ABZR87_RS17445 at 272.266 kb on - strand, within ABZR87_RS17445 at 272.266 kb on - strand, within ABZR87_RS17445 at 272.266 kb on - strand, within ABZR87_RS17445 at 272.343 kb on + strand, within ABZR87_RS17445 at 272.343 kb on + strand, within ABZR87_RS17445 at 272.343 kb on + strand, within ABZR87_RS17445 at 272.343 kb on + strand, within ABZR87_RS17445 at 272.344 kb on - strand, within ABZR87_RS17445 at 272.344 kb on - strand, within ABZR87_RS17445 at 272.344 kb on - strand, within ABZR87_RS17445 at 272.344 kb on - strand, within ABZR87_RS17445 at 272.403 kb on + strand, within ABZR87_RS17445 at 272.403 kb on + strand, within ABZR87_RS17445 at 272.598 kb on + strand, within ABZR87_RS17445 at 272.598 kb on + strand, within ABZR87_RS17445 at 272.598 kb on + strand, within ABZR87_RS17445 at 272.598 kb on + strand, within ABZR87_RS17445 at 272.599 kb on - strand, within ABZR87_RS17445
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 270,352 - +0.9 270,360 + ABZR87_RS17435 0.11 -0.8 270,360 + ABZR87_RS17435 0.11 -2.4 270,360 + ABZR87_RS17435 0.11 +1.2 270,360 + ABZR87_RS17435 0.11 -1.5 270,361 - ABZR87_RS17435 0.11 +1.0 270,570 + ABZR87_RS17435 0.34 +0.9 270,711 + ABZR87_RS17435 0.50 +0.7 270,712 - ABZR87_RS17435 0.50 +0.3 270,718 - ABZR87_RS17435 0.51 +0.6 270,734 + ABZR87_RS17435 0.53 +0.2 270,735 - ABZR87_RS17435 0.53 -0.3 270,735 - ABZR87_RS17435 0.53 +1.3 270,735 - ABZR87_RS17435 0.53 +0.7 270,735 - ABZR87_RS17435 0.53 +0.1 271,087 + -0.7 271,087 + +0.5 271,088 - +0.2 271,152 + -0.3 271,152 + -1.5 271,152 + +0.7 271,153 - +0.1 271,177 + +0.0 271,188 - -0.6 271,238 + +0.3 271,239 - +0.6 271,239 - +0.8 271,303 - +0.4 271,303 - +0.1 271,559 + ABZR87_RS17440 0.58 -1.1 271,700 - ABZR87_RS17440 0.88 +0.5 272,067 + ABZR87_RS17445 0.14 -0.3 272,067 + ABZR87_RS17445 0.14 +0.2 272,067 + ABZR87_RS17445 0.14 +0.3 272,068 - ABZR87_RS17445 0.14 +0.3 272,091 + ABZR87_RS17445 0.15 +1.2 272,092 - ABZR87_RS17445 0.15 -0.5 272,092 - ABZR87_RS17445 0.15 +0.8 272,092 - ABZR87_RS17445 0.15 -2.4 272,092 - ABZR87_RS17445 0.15 +0.6 272,127 + ABZR87_RS17445 0.17 -0.8 272,127 + ABZR87_RS17445 0.17 -0.6 272,265 + ABZR87_RS17445 0.23 -0.7 272,266 - ABZR87_RS17445 0.23 -0.5 272,266 - ABZR87_RS17445 0.23 +0.2 272,266 - ABZR87_RS17445 0.23 -0.7 272,343 + ABZR87_RS17445 0.27 +0.1 272,343 + ABZR87_RS17445 0.27 -1.9 272,343 + ABZR87_RS17445 0.27 +1.0 272,343 + ABZR87_RS17445 0.27 +0.3 272,344 - ABZR87_RS17445 0.27 -0.3 272,344 - ABZR87_RS17445 0.27 -0.9 272,344 - ABZR87_RS17445 0.27 +1.1 272,344 - ABZR87_RS17445 0.27 +0.3 272,403 + ABZR87_RS17445 0.30 +1.2 272,403 + ABZR87_RS17445 0.30 -0.5 272,598 + ABZR87_RS17445 0.38 +0.3 272,598 + ABZR87_RS17445 0.38 -0.3 272,598 + ABZR87_RS17445 0.38 -0.4 272,598 + ABZR87_RS17445 0.38 -1.3 272,599 - ABZR87_RS17445 0.38 -0.8
Or see this region's nucleotide sequence