Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17115 and ABZR87_RS17120 are separated by 97 nucleotides ABZR87_RS17120 and ABZR87_RS17125 are separated by 224 nucleotides ABZR87_RS17125 and ABZR87_RS17130 are separated by 19 nucleotides
ABZR87_RS17115: ABZR87_RS17115 - phytanoyl-CoA dioxygenase family protein, at 185,837 to 186,628
_RS17115
ABZR87_RS17120: ABZR87_RS17120 - hypothetical protein, at 186,726 to 186,947
_RS17120
ABZR87_RS17125: ABZR87_RS17125 - DUF2141 domain-containing protein, at 187,172 to 187,612
_RS17125
ABZR87_RS17130: ABZR87_RS17130 - carotenoid oxygenase family protein, at 187,632 to 189,158
_RS17130
Position (kb) 187
188 Strain fitness (log2 ratio) -2
-1
0
1 at 186.263 kb on + strand, within ABZR87_RS17115 at 186.350 kb on - strand, within ABZR87_RS17115 at 186.442 kb on + strand, within ABZR87_RS17115 at 186.553 kb on + strand at 186.554 kb on - strand at 186.557 kb on + strand at 186.557 kb on + strand at 186.557 kb on + strand at 186.557 kb on + strand at 186.558 kb on - strand at 186.560 kb on + strand at 186.560 kb on + strand at 186.560 kb on + strand at 186.560 kb on + strand at 186.561 kb on - strand at 186.561 kb on - strand at 186.649 kb on + strand at 186.649 kb on + strand at 186.649 kb on + strand at 186.649 kb on + strand at 186.649 kb on - strand at 186.650 kb on - strand at 186.650 kb on - strand at 186.650 kb on - strand at 186.688 kb on + strand at 186.688 kb on + strand at 186.688 kb on + strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.946 kb on - strand at 186.946 kb on - strand at 187.115 kb on + strand at 187.115 kb on + strand at 187.115 kb on + strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.206 kb on + strand at 187.407 kb on - strand, within ABZR87_RS17125 at 187.430 kb on + strand, within ABZR87_RS17125 at 187.508 kb on + strand, within ABZR87_RS17125 at 187.893 kb on + strand, within ABZR87_RS17130 at 187.894 kb on - strand, within ABZR87_RS17130 at 187.932 kb on + strand, within ABZR87_RS17130 at 188.208 kb on + strand, within ABZR87_RS17130 at 188.209 kb on - strand, within ABZR87_RS17130 at 188.209 kb on - strand, within ABZR87_RS17130 at 188.304 kb on + strand, within ABZR87_RS17130 at 188.305 kb on - strand, within ABZR87_RS17130 at 188.427 kb on + strand, within ABZR87_RS17130 at 188.428 kb on - strand, within ABZR87_RS17130
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 186,263 + ABZR87_RS17115 0.54 -1.1 186,350 - ABZR87_RS17115 0.65 -0.8 186,442 + ABZR87_RS17115 0.76 +0.3 186,553 + -0.1 186,554 - -2.6 186,557 + -0.8 186,557 + -0.2 186,557 + -0.3 186,557 + +0.1 186,558 - +0.1 186,560 + +0.4 186,560 + +1.0 186,560 + -0.9 186,560 + -0.5 186,561 - +0.1 186,561 - +0.0 186,649 + +0.2 186,649 + -0.0 186,649 + +0.5 186,649 + +0.8 186,649 - -0.4 186,650 - +0.8 186,650 - +0.2 186,650 - +0.2 186,688 + -0.5 186,688 + -0.9 186,688 + -0.2 186,689 - -1.0 186,689 - +0.4 186,689 - -0.9 186,689 - -0.7 186,945 + +0.3 186,945 + -0.3 186,945 + +0.8 186,945 + -0.0 186,945 + +0.0 186,946 - -1.3 186,946 - -0.5 187,115 + +0.9 187,115 + -0.5 187,115 + -0.5 187,116 - -0.0 187,116 - -1.0 187,116 - -0.4 187,116 - -0.5 187,116 - +0.2 187,206 + +0.1 187,407 - ABZR87_RS17125 0.53 +0.3 187,430 + ABZR87_RS17125 0.59 -2.0 187,508 + ABZR87_RS17125 0.76 -1.1 187,893 + ABZR87_RS17130 0.17 +0.4 187,894 - ABZR87_RS17130 0.17 -0.4 187,932 + ABZR87_RS17130 0.20 +0.6 188,208 + ABZR87_RS17130 0.38 -0.5 188,209 - ABZR87_RS17130 0.38 -0.0 188,209 - ABZR87_RS17130 0.38 +0.5 188,304 + ABZR87_RS17130 0.44 +0.5 188,305 - ABZR87_RS17130 0.44 +0.0 188,427 + ABZR87_RS17130 0.52 +0.0 188,428 - ABZR87_RS17130 0.52 +1.6
Or see this region's nucleotide sequence