Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15540

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
3,271,036	-				-0.3
3,271,077	-		ABZR87_RS15535	0.10	+0.3
3,271,123	+		ABZR87_RS15535	0.15	+0.0
3,271,123	+		ABZR87_RS15535	0.15	-1.2
3,271,123	+		ABZR87_RS15535	0.15	+0.4
3,271,160	-		ABZR87_RS15535	0.19	+1.1
3,271,550	-		ABZR87_RS15535	0.61	+0.1
3,271,581	+		ABZR87_RS15535	0.64	-1.0
3,271,582	-		ABZR87_RS15535	0.64	+0.2
3,271,582	-		ABZR87_RS15535	0.64	-1.6
3,271,674	+		ABZR87_RS15535	0.74	-1.2
3,271,674	+		ABZR87_RS15535	0.74	-0.5
3,271,674	+		ABZR87_RS15535	0.74	-1.2
3,271,674	+		ABZR87_RS15535	0.74	-0.2
3,271,711	-		ABZR87_RS15535	0.78	-0.3
3,271,711	-		ABZR87_RS15535	0.78	-1.9
3,271,866	+				-0.0
3,271,967	-				+1.0
3,271,967	-				-0.2
3,272,086	+				+0.1
3,272,087	-				-0.6
3,272,166	-		ABZR87_RS15540	0.13	-1.6
3,272,166	-		ABZR87_RS15540	0.13	-0.8
3,272,166	-		ABZR87_RS15540	0.13	+0.5
3,272,407	+		ABZR87_RS15540	0.30	+0.3
3,272,407	+		ABZR87_RS15540	0.30	+1.8
3,272,408	-		ABZR87_RS15540	0.30	+0.5
3,272,510	+		ABZR87_RS15540	0.36	+1.0
3,272,511	-		ABZR87_RS15540	0.36	+0.6
3,272,511	-		ABZR87_RS15540	0.36	+0.4
3,272,511	-		ABZR87_RS15540	0.36	-1.1
3,272,695	-		ABZR87_RS15540	0.49	-0.1
3,272,731	+		ABZR87_RS15540	0.51	-1.3
3,272,731	+		ABZR87_RS15540	0.51	+0.3
3,272,731	+		ABZR87_RS15540	0.51	-2.6
3,272,731	+		ABZR87_RS15540	0.51	-0.6
3,272,731	+		ABZR87_RS15540	0.51	-1.5
3,272,731	+		ABZR87_RS15540	0.51	-0.3
3,272,732	-		ABZR87_RS15540	0.51	-0.7
3,272,732	-		ABZR87_RS15540	0.51	-0.1
3,272,732	-		ABZR87_RS15540	0.51	-0.3
3,272,732	-		ABZR87_RS15540	0.51	+1.0
3,272,732	-		ABZR87_RS15540	0.51	+0.7
3,272,732	-		ABZR87_RS15540	0.51	+0.6
3,272,732	-		ABZR87_RS15540	0.51	+0.6
3,272,803	+		ABZR87_RS15540	0.56	-0.3
3,272,803	+		ABZR87_RS15540	0.56	+0.6
3,272,803	+		ABZR87_RS15540	0.56	-1.0
3,272,804	-		ABZR87_RS15540	0.56	+0.7
3,273,103	+		ABZR87_RS15540	0.76	+0.1
3,273,104	-		ABZR87_RS15540	0.76	-1.5
3,273,112	+		ABZR87_RS15540	0.77	+0.8
3,273,112	+		ABZR87_RS15540	0.77	-0.0
3,273,130	+		ABZR87_RS15540	0.78	-0.6
3,273,130	+		ABZR87_RS15540	0.78	+1.2
3,273,130	+		ABZR87_RS15540	0.78	-0.2
3,273,130	+		ABZR87_RS15540	0.78	-1.1
3,273,131	-		ABZR87_RS15540	0.78	-0.4
3,273,227	+		ABZR87_RS15540	0.84	-0.7
3,273,228	-		ABZR87_RS15540	0.84	-1.6
3,273,349	+				-1.0
3,273,350	-				-0.6
3,273,350	-				-0.5
3,273,455	+				+0.2
3,273,455	+				-1.6
3,273,455	+				-0.5
3,273,455	+				-0.2
3,273,455	+				+0.4
3,273,455	+				+0.2
3,273,456	-				+0.1
3,273,456	-				-2.1
3,273,456	-				-0.8
3,273,462	-				-0.4
3,273,558	+				-0.4
3,273,716	+				-0.3
3,273,716	+				+0.6
3,273,717	-				-0.7
3,273,717	-				-1.1
3,273,717	-				-2.0
3,273,717	-				-1.2
3,273,717	-				+1.0
3,273,717	-				-1.8
3,273,717	-				-0.5
3,273,854	+		ABZR87_RS15545	0.19	+0.6
3,273,854	+		ABZR87_RS15545	0.19	-2.3
3,273,854	+		ABZR87_RS15545	0.19	-0.5
3,273,854	+		ABZR87_RS15545	0.19	+1.1
3,273,854	+		ABZR87_RS15545	0.19	+0.0
3,273,854	+		ABZR87_RS15545	0.19	-1.6
3,273,854	+		ABZR87_RS15545	0.19	+0.0
3,273,854	+		ABZR87_RS15545	0.19	+0.6
3,273,854	+		ABZR87_RS15545	0.19	-0.3
3,273,855	-		ABZR87_RS15545	0.19	-1.0
3,273,855	-		ABZR87_RS15545	0.19	-1.1
3,273,855	-		ABZR87_RS15545	0.19	-0.6
3,273,856	+		ABZR87_RS15545	0.19	-0.1
3,273,857	-		ABZR87_RS15545	0.19	-1.6
3,273,857	-		ABZR87_RS15545	0.19	-3.2
3,273,884	+		ABZR87_RS15545	0.22	-1.1
3,273,885	-		ABZR87_RS15545	0.23	-0.2
3,273,908	+		ABZR87_RS15545	0.25	-0.4
3,273,908	+		ABZR87_RS15545	0.25	+0.7
3,273,908	+		ABZR87_RS15545	0.25	-1.4
3,273,908	+		ABZR87_RS15545	0.25	-0.6
3,273,909	-		ABZR87_RS15545	0.25	+1.4
3,273,909	-		ABZR87_RS15545	0.25	+0.6
3,273,965	-		ABZR87_RS15545	0.32	+0.4
3,273,965	-		ABZR87_RS15545	0.32	-0.4
3,274,076	-		ABZR87_RS15545	0.46	+3.0
3,274,154	+		ABZR87_RS15545	0.56	-0.3
3,274,154	+		ABZR87_RS15545	0.56	-0.6
3,274,155	-		ABZR87_RS15545	0.56	-0.4
3,274,155	-		ABZR87_RS15545	0.56	-0.1
3,274,155	-		ABZR87_RS15545	0.56	+0.2
3,274,155	-		ABZR87_RS15545	0.56	+1.0
3,274,155	-		ABZR87_RS15545	0.56	-0.2
3,274,283	+		ABZR87_RS15545	0.71	+0.1
3,274,283	+		ABZR87_RS15545	0.71	-0.1
3,274,283	+		ABZR87_RS15545	0.71	-1.1
3,274,284	-		ABZR87_RS15545	0.71	-0.2
3,274,284	-		ABZR87_RS15545	0.71	+0.2
3,274,284	-		ABZR87_RS15545	0.71	+2.2
3,274,284	-		ABZR87_RS15545	0.71	+0.9
3,274,339	+		ABZR87_RS15545	0.78	+1.2
3,274,340	-		ABZR87_RS15545	0.78	+0.4