Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15530

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
3,269,067	+		ABZR87_RS15520	0.88	-0.1
3,269,068	-		ABZR87_RS15520	0.89	-0.4
3,269,110	+				+0.2
3,269,110	+				-1.3
3,269,156	+				+0.4
3,269,350	+		ABZR87_RS15525	0.20	-2.3
3,269,350	+		ABZR87_RS15525	0.20	+0.5
3,269,350	+		ABZR87_RS15525	0.20	-0.7
3,269,350	+		ABZR87_RS15525	0.20	+0.2
3,269,350	+		ABZR87_RS15525	0.20	-1.0
3,269,351	-		ABZR87_RS15525	0.20	+0.5
3,269,351	-		ABZR87_RS15525	0.20	-0.7
3,269,351	-		ABZR87_RS15525	0.20	-1.1
3,269,351	-		ABZR87_RS15525	0.20	+0.7
3,269,351	-		ABZR87_RS15525	0.20	-1.2
3,269,351	-		ABZR87_RS15525	0.20	+0.2
3,269,413	+		ABZR87_RS15525	0.29	-0.7
3,269,413	+		ABZR87_RS15525	0.29	-1.0
3,269,710	+		ABZR87_RS15525	0.71	+0.1
3,269,710	+		ABZR87_RS15525	0.71	-1.0
3,269,710	+		ABZR87_RS15525	0.71	-0.7
3,269,710	+		ABZR87_RS15525	0.71	+0.2
3,269,710	+		ABZR87_RS15525	0.71	+0.6
3,269,711	-		ABZR87_RS15525	0.72	+0.6
3,269,711	-		ABZR87_RS15525	0.72	-1.8
3,269,711	-		ABZR87_RS15525	0.72	-0.1
3,269,711	-		ABZR87_RS15525	0.72	+0.2
3,269,723	-		ABZR87_RS15525	0.73	+0.3
3,269,824	+		ABZR87_RS15525	0.88	-0.6
3,269,824	+		ABZR87_RS15525	0.88	-0.3
3,269,824	+		ABZR87_RS15525	0.88	+1.1
3,269,824	+		ABZR87_RS15525	0.88	-0.6
3,269,825	-		ABZR87_RS15525	0.88	-0.0
3,269,825	-		ABZR87_RS15525	0.88	-0.4
3,269,825	-		ABZR87_RS15525	0.88	-1.6
3,269,825	-		ABZR87_RS15525	0.88	-0.7
3,269,848	+				-1.6
3,269,848	+				+0.1
3,269,848	+				-0.6
3,269,849	-				+0.0
3,269,849	-				+0.2
3,269,849	-				-2.4
3,269,849	-				-0.1
3,269,970	+				+2.0
3,269,970	+				-0.7
3,269,971	-				-0.5
3,269,981	+				-1.0
3,269,983	+				+0.5
3,269,984	-				+0.3
3,270,104	+				+0.2
3,270,104	+				-0.6
3,270,121	+		ABZR87_RS15530	0.12	-0.1
3,270,121	+		ABZR87_RS15530	0.12	+0.4
3,270,121	+		ABZR87_RS15530	0.12	+0.8
3,270,121	+		ABZR87_RS15530	0.12	+0.2
3,270,121	+		ABZR87_RS15530	0.12	+0.6
3,270,121	+		ABZR87_RS15530	0.12	-1.8
3,270,121	+		ABZR87_RS15530	0.12	-0.1
3,270,121	+		ABZR87_RS15530	0.12	+0.6
3,270,121	+		ABZR87_RS15530	0.12	-0.2
3,270,122	-		ABZR87_RS15530	0.12	-1.3
3,270,122	-		ABZR87_RS15530	0.12	+0.5
3,270,122	-		ABZR87_RS15530	0.12	-0.0
3,270,122	-		ABZR87_RS15530	0.12	+1.0
3,270,122	-		ABZR87_RS15530	0.12	+0.3
3,270,308	+		ABZR87_RS15530	0.32	+1.0
3,270,308	+		ABZR87_RS15530	0.32	-0.4
3,270,308	+		ABZR87_RS15530	0.32	+1.0
3,270,308	+		ABZR87_RS15530	0.32	+0.3
3,270,308	+		ABZR87_RS15530	0.32	+0.3
3,270,309	-		ABZR87_RS15530	0.32	+0.0
3,270,361	+		ABZR87_RS15530	0.38	-0.8
3,270,361	+		ABZR87_RS15530	0.38	+1.3
3,270,361	+		ABZR87_RS15530	0.38	-0.2
3,270,521	+		ABZR87_RS15530	0.56	-0.1
3,270,522	-		ABZR87_RS15530	0.56	-0.5
3,270,522	-		ABZR87_RS15530	0.56	+0.1
3,270,522	-		ABZR87_RS15530	0.56	-0.0
3,270,585	+		ABZR87_RS15530	0.63	-0.1
3,270,615	+		ABZR87_RS15530	0.66	+0.4
3,270,616	-		ABZR87_RS15530	0.66	+1.0
3,270,616	-		ABZR87_RS15530	0.66	+1.3
3,270,757	+		ABZR87_RS15530	0.82	+1.1
3,270,758	-		ABZR87_RS15530	0.82	+0.2
3,270,758	-		ABZR87_RS15530	0.82	+0.6
3,270,758	-		ABZR87_RS15530	0.82	-0.1
3,270,758	-		ABZR87_RS15530	0.82	-0.3
3,270,758	-		ABZR87_RS15530	0.82	-0.1
3,270,916	+				-0.8
3,270,947	+				-0.7
3,270,947	+				-0.4
3,270,947	+				-0.2
3,270,948	-				+0.6
3,271,036	-				-0.3
3,271,077	-		ABZR87_RS15535	0.10	+0.3
3,271,123	+		ABZR87_RS15535	0.15	+0.0
3,271,123	+		ABZR87_RS15535	0.15	-1.2
3,271,123	+		ABZR87_RS15535	0.15	+0.4
3,271,160	-		ABZR87_RS15535	0.19	+1.1
3,271,550	-		ABZR87_RS15535	0.61	+0.1
3,271,581	+		ABZR87_RS15535	0.64	-1.0
3,271,582	-		ABZR87_RS15535	0.64	+0.2
3,271,582	-		ABZR87_RS15535	0.64	-1.6
3,271,674	+		ABZR87_RS15535	0.74	-1.2
3,271,674	+		ABZR87_RS15535	0.74	-0.5
3,271,674	+		ABZR87_RS15535	0.74	-1.2
3,271,674	+		ABZR87_RS15535	0.74	-0.2
3,271,711	-		ABZR87_RS15535	0.78	-0.3
3,271,711	-		ABZR87_RS15535	0.78	-1.9
3,271,866	+				-0.0