Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15035

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
3,169,442	+				+0.5
3,169,443	-				-0.2
3,169,549	+				+0.8
3,169,549	+				-2.1
3,169,549	+				+0.8
3,169,550	-				-0.7
3,169,550	-				-0.6
3,169,578	+		ABZR87_RS15030	0.12	-0.2
3,169,578	+		ABZR87_RS15030	0.12	-1.1
3,169,789	+		ABZR87_RS15030	0.37	-0.2
3,169,789	+		ABZR87_RS15030	0.37	+1.2
3,169,789	+		ABZR87_RS15030	0.37	+0.4
3,169,789	+		ABZR87_RS15030	0.37	+0.2
3,169,789	+		ABZR87_RS15030	0.37	+0.3
3,169,790	-		ABZR87_RS15030	0.37	-1.9
3,169,790	-		ABZR87_RS15030	0.37	+0.2
3,169,790	-		ABZR87_RS15030	0.37	+1.8
3,169,790	-		ABZR87_RS15030	0.37	+0.1
3,169,790	-		ABZR87_RS15030	0.37	+0.0
3,169,790	-		ABZR87_RS15030	0.37	+0.1
3,169,954	+		ABZR87_RS15030	0.56	-0.9
3,169,954	+		ABZR87_RS15030	0.56	+0.5
3,169,955	-		ABZR87_RS15030	0.56	+0.0
3,169,996	+		ABZR87_RS15030	0.61	+0.2
3,169,997	-		ABZR87_RS15030	0.61	+0.3
3,170,056	+		ABZR87_RS15030	0.68	+0.2
3,170,056	+		ABZR87_RS15030	0.68	-0.4
3,170,056	+		ABZR87_RS15030	0.68	+1.2
3,170,057	-		ABZR87_RS15030	0.68	-0.3
3,170,057	-		ABZR87_RS15030	0.68	+0.5
3,170,057	-		ABZR87_RS15030	0.68	+0.0
3,170,057	-		ABZR87_RS15030	0.68	+0.8
3,170,080	+		ABZR87_RS15030	0.71	+0.2
3,170,081	-		ABZR87_RS15030	0.71	-0.2
3,170,081	-		ABZR87_RS15030	0.71	+0.5
3,170,194	+		ABZR87_RS15030	0.84	-0.2
3,170,194	+		ABZR87_RS15030	0.84	+0.7
3,170,194	+		ABZR87_RS15030	0.84	-1.2
3,170,195	-		ABZR87_RS15030	0.85	+0.6
3,170,296	+				+0.4
3,170,296	+				+0.3
3,170,296	+				+0.2
3,170,297	-				+0.1
3,170,297	-				-0.0
3,170,345	+				-0.6
3,170,463	-		ABZR87_RS15035	0.13	+1.8
3,170,516	+		ABZR87_RS15035	0.18	+0.6
3,170,516	+		ABZR87_RS15035	0.18	+0.2
3,170,516	+		ABZR87_RS15035	0.18	+0.8
3,170,582	+		ABZR87_RS15035	0.25	-0.2
3,170,582	+		ABZR87_RS15035	0.25	+0.3
3,170,582	+		ABZR87_RS15035	0.25	-0.3
3,170,582	+		ABZR87_RS15035	0.25	+0.3
3,170,582	+		ABZR87_RS15035	0.25	-1.4
3,170,582	+		ABZR87_RS15035	0.25	+0.5
3,170,583	-		ABZR87_RS15035	0.25	+0.1
3,170,583	-		ABZR87_RS15035	0.25	-1.2
3,170,583	-		ABZR87_RS15035	0.25	-0.6
3,170,583	-		ABZR87_RS15035	0.25	+0.4
3,170,583	-		ABZR87_RS15035	0.25	+0.1
3,170,601	-		ABZR87_RS15035	0.27	+1.1
3,170,611	+		ABZR87_RS15035	0.28	+1.3
3,170,681	+		ABZR87_RS15035	0.36	+1.3
3,170,681	+		ABZR87_RS15035	0.36	+0.1
3,170,681	+		ABZR87_RS15035	0.36	+0.1
3,170,682	-		ABZR87_RS15035	0.36	-0.3
3,170,682	-		ABZR87_RS15035	0.36	-0.3
3,170,682	-		ABZR87_RS15035	0.36	-0.0
3,170,682	-		ABZR87_RS15035	0.36	-0.5
3,170,682	-		ABZR87_RS15035	0.36	+0.2
3,170,714	+		ABZR87_RS15035	0.39	-0.8
3,170,715	-		ABZR87_RS15035	0.39	-0.6
3,170,715	-		ABZR87_RS15035	0.39	-2.4
3,170,799	+		ABZR87_RS15035	0.48	+1.2
3,170,799	+		ABZR87_RS15035	0.48	+1.1
3,170,799	+		ABZR87_RS15035	0.48	+0.6
3,170,799	+		ABZR87_RS15035	0.48	-0.1
3,170,799	+		ABZR87_RS15035	0.48	+0.3
3,170,799	+		ABZR87_RS15035	0.48	+0.1
3,170,799	+		ABZR87_RS15035	0.48	-0.1
3,170,799	+		ABZR87_RS15035	0.48	+0.2
3,170,799	+		ABZR87_RS15035	0.48	+0.4
3,170,799	+		ABZR87_RS15035	0.48	+0.2
3,170,799	+		ABZR87_RS15035	0.48	+0.5
3,170,800	-		ABZR87_RS15035	0.48	+0.5
3,170,800	-		ABZR87_RS15035	0.48	+0.2
3,170,847	+		ABZR87_RS15035	0.53	+0.1
3,170,848	-		ABZR87_RS15035	0.53	+1.0
3,170,873	+		ABZR87_RS15035	0.56	-0.1
3,170,874	-		ABZR87_RS15035	0.56	-1.3
3,170,874	-		ABZR87_RS15035	0.56	-1.8
3,170,874	-		ABZR87_RS15035	0.56	-0.4
3,170,972	+		ABZR87_RS15035	0.66	+0.4
3,170,972	+		ABZR87_RS15035	0.66	+0.8
3,170,972	+		ABZR87_RS15035	0.66	+0.2
3,170,972	+		ABZR87_RS15035	0.66	+0.1
3,170,973	-		ABZR87_RS15035	0.66	-0.9
3,171,042	+		ABZR87_RS15035	0.74	-0.3
3,171,042	+		ABZR87_RS15035	0.74	+0.3
3,171,043	-		ABZR87_RS15035	0.74	+0.5
3,171,043	-		ABZR87_RS15035	0.74	+0.3
3,171,245	+				+0.5
3,171,245	+				+0.6
3,171,245	+				+0.4
3,171,246	-				-1.1
3,171,246	-				-0.0
3,171,263	+				-1.2
3,171,263	+				-0.2
3,171,264	-				+2.3
3,171,264	-				-0.3
3,171,264	-				+0.0
3,171,264	-				-1.4
3,171,267	+				-0.9
3,171,268	-				+0.3
3,171,268	-				+0.4
3,171,325	-				+0.6
3,171,355	+				-0.9
3,171,356	-				-2.4
3,171,398	-				-1.0
3,171,399	+				+1.6
3,171,429	+				+0.4
3,171,430	-				+0.4
3,171,445	+				-0.8
3,171,446	-				+0.1
3,171,478	+				+0.9
3,171,478	+				-1.4
3,171,478	+				+0.5
3,171,496	+				-0.0
3,171,496	+				+1.1
3,171,496	+				+0.6
3,171,496	+				-0.3
3,171,497	-				+0.3
3,171,497	-				+0.2
3,171,497	-				-0.8
3,171,497	-				+0.9
3,171,497	-				+0.1
3,171,497	-				+0.5
3,171,497	-				+0.5
3,171,557	-				+0.5
3,171,590	+				+0.3
3,171,590	+				-0.4
3,171,590	+				-0.4
3,171,591	-				+0.3
3,171,591	-				-0.8
3,171,658	+				+0.8
3,171,721	+		ABZR87_RS15040	0.14	-0.5
3,171,721	+		ABZR87_RS15040	0.14	+0.7
3,171,722	-		ABZR87_RS15040	0.14	+0.1
3,171,876	-		ABZR87_RS15040	0.24	-0.9
3,171,884	+		ABZR87_RS15040	0.25	+0.3
3,172,088	+		ABZR87_RS15040	0.38	-0.8
3,172,089	-		ABZR87_RS15040	0.38	+0.6
3,172,089	-		ABZR87_RS15040	0.38	-0.4
3,172,124	+		ABZR87_RS15040	0.40	-2.0
3,172,124	+		ABZR87_RS15040	0.40	-0.0
3,172,125	-		ABZR87_RS15040	0.41	+0.2
3,172,253	+		ABZR87_RS15040	0.49	-0.3
3,172,253	+		ABZR87_RS15040	0.49	+0.4
3,172,253	+		ABZR87_RS15040	0.49	+1.4
3,172,253	+		ABZR87_RS15040	0.49	-0.5
3,172,253	+		ABZR87_RS15040	0.49	-0.3
3,172,253	+		ABZR87_RS15040	0.49	+1.3
3,172,254	-		ABZR87_RS15040	0.49	+0.4
3,172,254	-		ABZR87_RS15040	0.49	+0.2
3,172,277	+		ABZR87_RS15040	0.50	-0.4
3,172,277	+		ABZR87_RS15040	0.50	-0.6
3,172,277	+		ABZR87_RS15040	0.50	+0.2
3,172,277	+		ABZR87_RS15040	0.50	+0.5
3,172,277	+		ABZR87_RS15040	0.50	+0.1
3,172,278	-		ABZR87_RS15040	0.51	+0.2
3,172,278	-		ABZR87_RS15040	0.51	+1.3
3,172,278	-		ABZR87_RS15040	0.51	-0.2