Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14505

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
3,062,393	+		ABZR87_RS14500	0.28	-1.5
3,062,393	+		ABZR87_RS14500	0.28	-0.8
3,062,393	+		ABZR87_RS14500	0.28	-1.8
3,062,394	-		ABZR87_RS14500	0.28	-1.3
3,062,394	-		ABZR87_RS14500	0.28	-0.7
3,062,394	-		ABZR87_RS14500	0.28	-0.1
3,062,394	-		ABZR87_RS14500	0.28	-0.9
3,062,516	+		ABZR87_RS14500	0.38	-0.7
3,062,516	+		ABZR87_RS14500	0.38	-0.9
3,062,516	+		ABZR87_RS14500	0.38	-2.3
3,062,516	+		ABZR87_RS14500	0.38	-0.8
3,062,522	+		ABZR87_RS14500	0.39	-1.5
3,062,523	-		ABZR87_RS14500	0.39	-1.6
3,062,657	+		ABZR87_RS14500	0.50	+0.6
3,062,690	+		ABZR87_RS14500	0.53	-0.8
3,062,690	+		ABZR87_RS14500	0.53	-0.8
3,062,690	+		ABZR87_RS14500	0.53	-0.3
3,062,691	-		ABZR87_RS14500	0.53	-1.4
3,062,691	-		ABZR87_RS14500	0.53	-0.4
3,062,691	-		ABZR87_RS14500	0.53	-1.5
3,062,691	-		ABZR87_RS14500	0.53	+0.1
3,062,691	-		ABZR87_RS14500	0.53	-0.8
3,062,691	-		ABZR87_RS14500	0.53	-0.9
3,062,691	-		ABZR87_RS14500	0.53	+0.3
3,062,691	-		ABZR87_RS14500	0.53	-1.3
3,062,691	-		ABZR87_RS14500	0.53	-1.4
3,062,691	-		ABZR87_RS14500	0.53	-0.5
3,062,849	+		ABZR87_RS14500	0.66	-0.6
3,062,849	+		ABZR87_RS14500	0.66	+0.9
3,062,850	-		ABZR87_RS14500	0.66	+1.4
3,062,850	-		ABZR87_RS14500	0.66	-1.0
3,062,850	-		ABZR87_RS14500	0.66	-2.2
3,062,850	-		ABZR87_RS14500	0.66	-0.3
3,062,871	-		ABZR87_RS14500	0.68	-0.5
3,063,026	+		ABZR87_RS14500	0.81	+0.7
3,063,026	+		ABZR87_RS14500	0.81	+0.4
3,063,026	+		ABZR87_RS14500	0.81	-0.1
3,063,026	+		ABZR87_RS14500	0.81	+0.2
3,063,026	+		ABZR87_RS14500	0.81	-0.7
3,063,026	+		ABZR87_RS14500	0.81	+0.0
3,063,027	-		ABZR87_RS14500	0.81	+0.0
3,063,027	-		ABZR87_RS14500	0.81	+1.4
3,063,027	-		ABZR87_RS14500	0.81	-1.7
3,063,027	-		ABZR87_RS14500	0.81	-0.3
3,063,071	+		ABZR87_RS14500	0.85	-0.1
3,063,072	-		ABZR87_RS14500	0.85	-2.3
3,063,072	-		ABZR87_RS14500	0.85	-0.4
3,063,111	-		ABZR87_RS14500	0.88	-1.5
3,063,111	-		ABZR87_RS14500	0.88	-1.8
3,063,116	+		ABZR87_RS14500	0.88	-0.5
3,063,155	+				-1.0
3,063,155	+				-2.0
3,063,156	-				-0.5
3,063,156	-				-0.8
3,063,251	+				+0.2
3,063,251	+				-0.4
3,063,251	+				-0.9
3,063,251	+				-0.1
3,063,251	+				-0.4
3,063,251	+				-1.0
3,063,252	-				-0.9
3,063,252	-				-0.8
3,063,252	-				-0.9
3,063,252	-				+0.5
3,063,252	-				-0.8
3,063,252	-				-0.5
3,063,309	+				-0.1
3,063,310	-				-0.4
3,063,310	-				-0.7
3,063,310	-				+0.1
3,063,475	+		ABZR87_RS14505	0.18	-1.5
3,063,476	-		ABZR87_RS14505	0.18	-1.8
3,063,635	-		ABZR87_RS14505	0.40	-1.4
3,063,635	-		ABZR87_RS14505	0.40	-0.4
3,063,931	+		ABZR87_RS14505	0.83	-0.8
3,063,950	-		ABZR87_RS14505	0.85	-0.8
3,063,950	-		ABZR87_RS14505	0.85	+0.6
3,063,950	-		ABZR87_RS14505	0.85	-1.0
3,064,038	-				-0.1
3,064,167	+		ABZR87_RS14510	0.12	-1.0
3,064,167	+		ABZR87_RS14510	0.12	-1.3
3,064,167	+		ABZR87_RS14510	0.12	+0.9
3,064,168	-		ABZR87_RS14510	0.12	+1.3
3,064,369	-		ABZR87_RS14510	0.37	+1.2
3,064,369	-		ABZR87_RS14510	0.37	-1.8
3,064,369	-		ABZR87_RS14510	0.37	-0.9
3,064,369	-		ABZR87_RS14510	0.37	-0.1
3,064,557	+		ABZR87_RS14510	0.59	-0.5
3,064,557	+		ABZR87_RS14510	0.59	-1.4
3,064,558	-		ABZR87_RS14510	0.60	+2.1
3,064,558	-		ABZR87_RS14510	0.60	-0.3
3,064,560	+		ABZR87_RS14510	0.60	+1.1
3,064,560	+		ABZR87_RS14510	0.60	-1.1
3,064,561	-		ABZR87_RS14510	0.60	+1.1
3,064,561	-		ABZR87_RS14510	0.60	-2.0
3,064,563	+		ABZR87_RS14510	0.60	+0.6
3,064,564	-		ABZR87_RS14510	0.60	-1.3