Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10175

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,157,767	+		ABZR87_RS10165	0.59	+1.2
2,157,767	+		ABZR87_RS10165	0.59	+2.5
2,157,768	-		ABZR87_RS10165	0.59	+2.1
2,157,768	-		ABZR87_RS10165	0.59	+1.0
2,157,768	-		ABZR87_RS10165	0.59	+1.9
2,157,885	+		ABZR87_RS10165	0.79	+1.3
2,157,885	+		ABZR87_RS10165	0.79	+0.4
2,157,885	+		ABZR87_RS10165	0.79	+0.1
2,157,885	+		ABZR87_RS10165	0.79	+1.8
2,157,886	-		ABZR87_RS10165	0.79	+1.5
2,157,886	-		ABZR87_RS10165	0.79	+1.7
2,157,886	-		ABZR87_RS10165	0.79	+1.6
2,157,886	-		ABZR87_RS10165	0.79	+1.6
2,158,309	+		ABZR87_RS10170	0.30	-0.9
2,158,309	+		ABZR87_RS10170	0.30	-1.0
2,158,309	+		ABZR87_RS10170	0.30	+0.8
2,158,310	-		ABZR87_RS10170	0.30	+0.1
2,158,310	-		ABZR87_RS10170	0.30	+0.0
2,158,310	-		ABZR87_RS10170	0.30	+1.8
2,158,492	+		ABZR87_RS10170	0.59	-0.2
2,158,493	-		ABZR87_RS10170	0.59	-0.9
2,158,650	-		ABZR87_RS10170	0.84	+0.5
2,158,650	-		ABZR87_RS10170	0.84	-1.1
2,158,684	+		ABZR87_RS10170	0.89	+0.6
2,158,684	+		ABZR87_RS10170	0.89	+0.9
2,158,685	-		ABZR87_RS10170	0.89	+0.5
2,158,698	-				-1.3
2,158,752	-				-0.4
2,158,954	+		ABZR87_RS10175	0.17	-1.3
2,158,954	+		ABZR87_RS10175	0.17	-2.5
2,158,955	-		ABZR87_RS10175	0.17	-0.6
2,158,955	-		ABZR87_RS10175	0.17	-0.5
2,158,972	+		ABZR87_RS10175	0.19	-1.5
2,158,972	+		ABZR87_RS10175	0.19	-1.4
2,158,973	-		ABZR87_RS10175	0.19	-0.3
2,159,113	+		ABZR87_RS10175	0.32	-1.0
2,159,171	+		ABZR87_RS10175	0.37	-2.3
2,159,178	+		ABZR87_RS10175	0.38	+1.3
2,159,206	+		ABZR87_RS10175	0.40	+0.0
2,159,296	+		ABZR87_RS10175	0.48	+0.3
2,159,296	+		ABZR87_RS10175	0.48	+0.0
2,159,301	+		ABZR87_RS10175	0.49	-0.5
2,159,316	+		ABZR87_RS10175	0.50	-1.0
2,159,316	+		ABZR87_RS10175	0.50	-1.1
2,159,317	-		ABZR87_RS10175	0.50	-0.9
2,159,464	+		ABZR87_RS10175	0.64	+1.2
2,159,465	-		ABZR87_RS10175	0.64	-0.5
2,159,759	+				-0.5
2,159,809	+				+0.8
2,159,809	+				-1.3
2,159,810	-				+0.4
2,159,838	+				+0.5
2,159,838	+				+0.9
2,159,839	-				+0.1
2,159,839	-				-0.4
2,159,861	-				+0.4
2,159,861	-				+0.4
2,159,922	-				-1.0
2,159,953	+				+0.5
2,159,954	-				-1.1
2,160,071	+				-0.7
2,160,071	+				-1.0
2,160,071	+				+0.2
2,160,071	+				+2.0
2,160,071	+				-0.0
2,160,072	-				+0.0
2,160,072	-				+0.0
2,160,072	-				-1.0
2,160,072	-				-0.1
2,160,072	-				+0.5
2,160,151	+		ABZR87_RS10180	0.13	-1.6
2,160,151	+		ABZR87_RS10180	0.13	-0.8
2,160,152	-		ABZR87_RS10180	0.13	-1.4
2,160,152	-		ABZR87_RS10180	0.13	+1.2
2,160,326	+		ABZR87_RS10180	0.25	+1.7
2,160,326	+		ABZR87_RS10180	0.25	+0.9
2,160,326	+		ABZR87_RS10180	0.25	-0.3
2,160,327	-		ABZR87_RS10180	0.25	-0.8
2,160,327	-		ABZR87_RS10180	0.25	+0.2
2,160,327	-		ABZR87_RS10180	0.25	+0.6
2,160,327	-		ABZR87_RS10180	0.25	-0.1
2,160,327	-		ABZR87_RS10180	0.25	-1.4
2,160,371	+		ABZR87_RS10180	0.28	-0.5
2,160,371	+		ABZR87_RS10180	0.28	-0.0
2,160,371	+		ABZR87_RS10180	0.28	-1.2
2,160,371	+		ABZR87_RS10180	0.28	+0.4
2,160,372	-		ABZR87_RS10180	0.28	+0.0
2,160,372	-		ABZR87_RS10180	0.28	+0.3
2,160,372	-		ABZR87_RS10180	0.28	-1.7
2,160,372	-		ABZR87_RS10180	0.28	+0.1
2,160,553	+		ABZR87_RS10180	0.40	-0.3
2,160,553	+		ABZR87_RS10180	0.40	+0.4
2,160,554	-		ABZR87_RS10180	0.40	+0.1
2,160,554	-		ABZR87_RS10180	0.40	+0.4
2,160,554	-		ABZR87_RS10180	0.40	+0.4
2,160,603	-		ABZR87_RS10180	0.43	+0.5
2,160,704	+		ABZR87_RS10180	0.50	+0.6
2,160,704	+		ABZR87_RS10180	0.50	+0.4
2,160,704	+		ABZR87_RS10180	0.50	+0.5
2,160,704	+		ABZR87_RS10180	0.50	-0.9
2,160,704	+		ABZR87_RS10180	0.50	-1.0
2,160,704	+		ABZR87_RS10180	0.50	-2.0
2,160,705	-		ABZR87_RS10180	0.50	-0.1
2,160,705	-		ABZR87_RS10180	0.50	-3.0
2,160,705	-		ABZR87_RS10180	0.50	-0.3
2,160,705	-		ABZR87_RS10180	0.50	-0.3
2,160,705	-		ABZR87_RS10180	0.50	+1.8
2,160,705	-		ABZR87_RS10180	0.50	-0.9
2,160,722	+		ABZR87_RS10180	0.51	+1.3
2,160,722	+		ABZR87_RS10180	0.51	+0.1
2,160,723	-		ABZR87_RS10180	0.51	-0.4