Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09850

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,092,947	+		ABZR87_RS09840	0.87	+0.3
2,093,174	-				+0.6
2,093,316	+		ABZR87_RS09845	0.20	+0.0
2,093,316	+		ABZR87_RS09845	0.20	+0.2
2,093,317	-		ABZR87_RS09845	0.21	+0.9
2,093,317	-		ABZR87_RS09845	0.21	-0.6
2,093,322	+		ABZR87_RS09845	0.22	+0.8
2,093,323	-		ABZR87_RS09845	0.22	+0.5
2,093,388	+		ABZR87_RS09845	0.35	+0.6
2,093,646	+		ABZR87_RS09845	0.87	+0.8
2,093,646	+		ABZR87_RS09845	0.87	+0.4
2,093,646	+		ABZR87_RS09845	0.87	-0.5
2,093,647	-		ABZR87_RS09845	0.87	-0.5
2,093,661	+		ABZR87_RS09845	0.90	-0.2
2,093,662	-				+0.0
2,093,709	+				+0.4
2,093,734	+				+0.2
2,093,741	+				+1.2
2,093,794	+				-0.0
2,093,794	+				-0.2
2,093,794	+				+0.0
2,093,794	+				-1.6
2,093,794	+				-0.5
2,093,794	+				+1.0
2,093,795	-				+1.0
2,093,893	+				+0.1
2,093,893	+				-2.4
2,093,893	+				-1.5
2,093,893	+				+0.0
2,093,894	-				-0.6
2,093,965	+		ABZR87_RS09850	0.18	-1.4
2,093,966	-		ABZR87_RS09850	0.18	-1.0
2,094,271	+		ABZR87_RS09850	0.78	-0.2
2,094,271	+		ABZR87_RS09850	0.78	-0.2
2,094,272	-		ABZR87_RS09850	0.78	-0.7
2,094,272	-		ABZR87_RS09850	0.78	-1.4
2,094,301	+		ABZR87_RS09850	0.84	+0.2
2,094,302	-		ABZR87_RS09850	0.84	+0.0
2,094,680	+		ABZR87_RS09855	0.11	+0.2
2,094,680	+		ABZR87_RS09855	0.11	-0.2
2,094,680	+		ABZR87_RS09855	0.11	-1.3
2,094,681	-		ABZR87_RS09855	0.11	-1.9
2,094,681	-		ABZR87_RS09855	0.11	+0.7
2,094,743	+		ABZR87_RS09855	0.19	-0.3
2,094,744	-		ABZR87_RS09855	0.19	+1.3
2,095,097	+		ABZR87_RS09855	0.66	+0.5
2,095,097	+		ABZR87_RS09855	0.66	-0.1
2,095,097	+		ABZR87_RS09855	0.66	+0.1
2,095,098	-		ABZR87_RS09855	0.66	+0.4
2,095,098	-		ABZR87_RS09855	0.66	-1.1
2,095,098	-		ABZR87_RS09855	0.66	+0.2
2,095,098	-		ABZR87_RS09855	0.66	-0.5
2,095,365	+				+0.3
2,095,384	-				+0.2