Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09840

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,090,452	+		ABZR87_RS09835	0.51	+0.5
2,090,453	-		ABZR87_RS09835	0.51	-0.9
2,090,542	-		ABZR87_RS09835	0.57	-2.1
2,090,631	+		ABZR87_RS09835	0.63	+0.6
2,090,631	+		ABZR87_RS09835	0.63	-0.8
2,090,635	+		ABZR87_RS09835	0.63	-0.6
2,090,635	+		ABZR87_RS09835	0.63	+0.0
2,090,636	-		ABZR87_RS09835	0.63	+0.5
2,090,636	-		ABZR87_RS09835	0.63	+0.3
2,090,637	-		ABZR87_RS09835	0.63	-0.9
2,090,708	-		ABZR87_RS09835	0.68	-0.1
2,090,750	+		ABZR87_RS09835	0.71	-1.0
2,090,751	-		ABZR87_RS09835	0.71	-0.3
2,090,751	-		ABZR87_RS09835	0.71	-0.4
2,090,848	+		ABZR87_RS09835	0.77	+1.1
2,090,848	+		ABZR87_RS09835	0.77	+0.6
2,090,848	+		ABZR87_RS09835	0.77	-0.2
2,090,848	+		ABZR87_RS09835	0.77	+0.9
2,090,894	+		ABZR87_RS09835	0.81	+0.2
2,090,895	-		ABZR87_RS09835	0.81	+0.0
2,091,049	+				+0.8
2,091,049	+				-0.3
2,091,049	+				+0.3
2,091,049	+				+0.5
2,091,049	+				-0.3
2,091,049	+				+0.3
2,091,049	+				-0.3
2,091,050	-				-1.1
2,091,050	-				+0.0
2,091,050	-				+0.1
2,091,050	-				+0.9
2,091,199	+				-0.7
2,091,199	+				+0.3
2,091,200	-				+0.3
2,091,203	+				-0.1
2,091,203	+				+1.0
2,091,203	+				-0.8
2,091,203	+				+0.4
2,091,203	+				+0.4
2,091,203	+				-0.3
2,091,204	-				-0.2
2,091,204	-				-0.5
2,091,204	-				+1.0
2,091,204	-				-0.4
2,091,204	-				+0.4
2,091,204	-				-1.5
2,091,241	-				-1.0
2,091,274	-				+0.3
2,091,478	-		ABZR87_RS09840	0.10	+0.8
2,091,667	+		ABZR87_RS09840	0.20	-0.3
2,091,668	-		ABZR87_RS09840	0.20	+0.7
2,091,668	-		ABZR87_RS09840	0.20	+0.8
2,091,883	+		ABZR87_RS09840	0.31	+0.4
2,091,883	+		ABZR87_RS09840	0.31	+0.9
2,091,894	+		ABZR87_RS09840	0.32	-0.8
2,091,894	+		ABZR87_RS09840	0.32	-0.2
2,091,894	+		ABZR87_RS09840	0.32	-0.7
2,091,895	-		ABZR87_RS09840	0.32	+1.0
2,091,895	-		ABZR87_RS09840	0.32	+0.7
2,091,895	-		ABZR87_RS09840	0.32	+0.4
2,091,895	-		ABZR87_RS09840	0.32	+0.5
2,092,033	+		ABZR87_RS09840	0.39	-0.1
2,092,033	+		ABZR87_RS09840	0.39	-0.1
2,092,034	-		ABZR87_RS09840	0.39	+0.3
2,092,034	-		ABZR87_RS09840	0.39	-0.3
2,092,034	-		ABZR87_RS09840	0.39	-0.2
2,092,045	+		ABZR87_RS09840	0.40	+1.0
2,092,046	-		ABZR87_RS09840	0.40	-0.8
2,092,046	-		ABZR87_RS09840	0.40	+0.6
2,092,046	-		ABZR87_RS09840	0.40	+0.2
2,092,117	+		ABZR87_RS09840	0.43	+0.4
2,092,132	+		ABZR87_RS09840	0.44	-0.8
2,092,132	+		ABZR87_RS09840	0.44	-0.5
2,092,132	+		ABZR87_RS09840	0.44	+0.6
2,092,132	+		ABZR87_RS09840	0.44	+0.2
2,092,133	-		ABZR87_RS09840	0.44	+1.5
2,092,133	-		ABZR87_RS09840	0.44	-1.1
2,092,133	-		ABZR87_RS09840	0.44	-0.1
2,092,133	-		ABZR87_RS09840	0.44	+1.4
2,092,133	-		ABZR87_RS09840	0.44	+0.2
2,092,133	-		ABZR87_RS09840	0.44	+0.7
2,092,195	+		ABZR87_RS09840	0.47	-0.3
2,092,196	-		ABZR87_RS09840	0.47	+0.4
2,092,247	-		ABZR87_RS09840	0.50	-0.4
2,092,420	+		ABZR87_RS09840	0.59	-0.7
2,092,421	-		ABZR87_RS09840	0.59	-2.1
2,092,486	-		ABZR87_RS09840	0.63	-0.2
2,092,494	+		ABZR87_RS09840	0.63	+1.0
2,092,494	+		ABZR87_RS09840	0.63	-0.6
2,092,564	+		ABZR87_RS09840	0.67	-1.1
2,092,564	+		ABZR87_RS09840	0.67	+0.6
2,092,564	+		ABZR87_RS09840	0.67	+1.6
2,092,565	-		ABZR87_RS09840	0.67	+1.6
2,092,565	-		ABZR87_RS09840	0.67	-1.0
2,092,601	-		ABZR87_RS09840	0.69	+0.5
2,092,601	-		ABZR87_RS09840	0.69	-1.5
2,092,601	-		ABZR87_RS09840	0.69	-0.8
2,092,601	-		ABZR87_RS09840	0.69	+0.3
2,092,603	+		ABZR87_RS09840	0.69	-1.4
2,092,604	-		ABZR87_RS09840	0.69	-0.2
2,092,604	-		ABZR87_RS09840	0.69	-0.6
2,092,604	-		ABZR87_RS09840	0.69	+0.2
2,092,604	-		ABZR87_RS09840	0.69	-0.2
2,092,947	+		ABZR87_RS09840	0.87	+0.3
2,093,174	-				+0.6
2,093,316	+		ABZR87_RS09845	0.20	+0.0
2,093,316	+		ABZR87_RS09845	0.20	+0.2
2,093,317	-		ABZR87_RS09845	0.21	+0.9
2,093,317	-		ABZR87_RS09845	0.21	-0.6
2,093,322	+		ABZR87_RS09845	0.22	+0.8
2,093,323	-		ABZR87_RS09845	0.22	+0.5
2,093,388	+		ABZR87_RS09845	0.35	+0.6
2,093,646	+		ABZR87_RS09845	0.87	+0.8
2,093,646	+		ABZR87_RS09845	0.87	+0.4
2,093,646	+		ABZR87_RS09845	0.87	-0.5
2,093,647	-		ABZR87_RS09845	0.87	-0.5
2,093,661	+		ABZR87_RS09845	0.90	-0.2
2,093,662	-				+0.0
2,093,709	+				+0.4
2,093,734	+				+0.2
2,093,741	+				+1.2
2,093,794	+				-0.0
2,093,794	+				-0.2
2,093,794	+				+0.0
2,093,794	+				-1.6
2,093,794	+				-0.5
2,093,794	+				+1.0
2,093,795	-				+1.0
2,093,893	+				+0.1
2,093,893	+				-2.4
2,093,893	+				-1.5
2,093,893	+				+0.0
2,093,894	-				-0.6
2,093,965	+		ABZR87_RS09850	0.18	-1.4
2,093,966	-		ABZR87_RS09850	0.18	-1.0