Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09835

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,089,199	-		ABZR87_RS09830	0.48	-0.9
2,089,199	-		ABZR87_RS09830	0.48	+0.5
2,089,252	+		ABZR87_RS09830	0.56	+0.3
2,089,252	+		ABZR87_RS09830	0.56	+0.2
2,089,252	+		ABZR87_RS09830	0.56	+0.2
2,089,252	+		ABZR87_RS09830	0.56	+0.7
2,089,252	+		ABZR87_RS09830	0.56	+0.6
2,089,253	-		ABZR87_RS09830	0.56	+1.1
2,089,253	-		ABZR87_RS09830	0.56	-0.5
2,089,253	-		ABZR87_RS09830	0.56	-1.0
2,089,253	-		ABZR87_RS09830	0.56	-0.5
2,089,253	-		ABZR87_RS09830	0.56	-0.7
2,089,253	-		ABZR87_RS09830	0.56	-0.6
2,089,253	-		ABZR87_RS09830	0.56	-0.6
2,089,253	-		ABZR87_RS09830	0.56	+0.2
2,089,253	-		ABZR87_RS09830	0.56	-0.3
2,089,253	-		ABZR87_RS09830	0.56	-0.8
2,089,380	+		ABZR87_RS09830	0.73	+0.1
2,089,464	+		ABZR87_RS09830	0.85	-0.1
2,089,464	+		ABZR87_RS09830	0.85	-0.6
2,089,536	+				+0.8
2,089,536	+				-0.7
2,089,634	+				-0.1
2,089,634	+				+0.4
2,089,634	+				+0.0
2,089,634	+				-0.4
2,089,635	-				-0.2
2,089,635	-				+0.4
2,089,635	-				+0.2
2,089,639	+				-0.3
2,089,645	+				-0.3
2,089,646	-				-0.9
2,089,646	-				-0.9
2,089,646	-				+0.3
2,089,670	-				+0.4
2,089,693	+				+0.7
2,089,693	+				+0.3
2,089,693	+				+0.1
2,089,694	-				+0.2
2,089,694	-				-0.5
2,089,936	+		ABZR87_RS09835	0.16	-0.1
2,089,936	+		ABZR87_RS09835	0.16	-0.8
2,089,936	+		ABZR87_RS09835	0.16	-0.4
2,089,937	-		ABZR87_RS09835	0.16	-0.5
2,089,961	-		ABZR87_RS09835	0.18	-0.4
2,089,961	-		ABZR87_RS09835	0.18	-0.4
2,089,961	-		ABZR87_RS09835	0.18	+0.1
2,089,990	+		ABZR87_RS09835	0.19	-0.6
2,089,990	+		ABZR87_RS09835	0.19	+0.9
2,089,990	+		ABZR87_RS09835	0.19	-0.8
2,089,991	-		ABZR87_RS09835	0.20	-1.5
2,089,991	-		ABZR87_RS09835	0.20	-0.0
2,089,991	-		ABZR87_RS09835	0.20	+1.0
2,089,991	-		ABZR87_RS09835	0.20	+0.6
2,090,452	+		ABZR87_RS09835	0.51	+0.5
2,090,453	-		ABZR87_RS09835	0.51	-0.9
2,090,542	-		ABZR87_RS09835	0.57	-2.1
2,090,631	+		ABZR87_RS09835	0.63	+0.6
2,090,631	+		ABZR87_RS09835	0.63	-0.8
2,090,635	+		ABZR87_RS09835	0.63	-0.6
2,090,635	+		ABZR87_RS09835	0.63	+0.0
2,090,636	-		ABZR87_RS09835	0.63	+0.5
2,090,636	-		ABZR87_RS09835	0.63	+0.3
2,090,637	-		ABZR87_RS09835	0.63	-0.9
2,090,708	-		ABZR87_RS09835	0.68	-0.1
2,090,750	+		ABZR87_RS09835	0.71	-1.0
2,090,751	-		ABZR87_RS09835	0.71	-0.3
2,090,751	-		ABZR87_RS09835	0.71	-0.4
2,090,848	+		ABZR87_RS09835	0.77	+1.1
2,090,848	+		ABZR87_RS09835	0.77	+0.6
2,090,848	+		ABZR87_RS09835	0.77	-0.2
2,090,848	+		ABZR87_RS09835	0.77	+0.9
2,090,894	+		ABZR87_RS09835	0.81	+0.2
2,090,895	-		ABZR87_RS09835	0.81	+0.0
2,091,049	+				+0.8
2,091,049	+				-0.3
2,091,049	+				+0.3
2,091,049	+				+0.5
2,091,049	+				-0.3
2,091,049	+				+0.3
2,091,049	+				-0.3
2,091,050	-				-1.1
2,091,050	-				+0.0
2,091,050	-				+0.1
2,091,050	-				+0.9
2,091,199	+				-0.7
2,091,199	+				+0.3
2,091,200	-				+0.3
2,091,203	+				-0.1
2,091,203	+				+1.0
2,091,203	+				-0.8
2,091,203	+				+0.4
2,091,203	+				+0.4
2,091,203	+				-0.3
2,091,204	-				-0.2
2,091,204	-				-0.5
2,091,204	-				+1.0
2,091,204	-				-0.4
2,091,204	-				+0.4
2,091,204	-				-1.5
2,091,241	-				-1.0
2,091,274	-				+0.3
2,091,478	-		ABZR87_RS09840	0.10	+0.8
2,091,667	+		ABZR87_RS09840	0.20	-0.3
2,091,668	-		ABZR87_RS09840	0.20	+0.7
2,091,668	-		ABZR87_RS09840	0.20	+0.8
2,091,883	+		ABZR87_RS09840	0.31	+0.4
2,091,883	+		ABZR87_RS09840	0.31	+0.9
2,091,894	+		ABZR87_RS09840	0.32	-0.8
2,091,894	+		ABZR87_RS09840	0.32	-0.2
2,091,894	+		ABZR87_RS09840	0.32	-0.7
2,091,895	-		ABZR87_RS09840	0.32	+1.0
2,091,895	-		ABZR87_RS09840	0.32	+0.7
2,091,895	-		ABZR87_RS09840	0.32	+0.4
2,091,895	-		ABZR87_RS09840	0.32	+0.5
2,092,033	+		ABZR87_RS09840	0.39	-0.1
2,092,033	+		ABZR87_RS09840	0.39	-0.1
2,092,034	-		ABZR87_RS09840	0.39	+0.3
2,092,034	-		ABZR87_RS09840	0.39	-0.3
2,092,034	-		ABZR87_RS09840	0.39	-0.2
2,092,045	+		ABZR87_RS09840	0.40	+1.0
2,092,046	-		ABZR87_RS09840	0.40	-0.8
2,092,046	-		ABZR87_RS09840	0.40	+0.6
2,092,046	-		ABZR87_RS09840	0.40	+0.2
2,092,117	+		ABZR87_RS09840	0.43	+0.4
2,092,132	+		ABZR87_RS09840	0.44	-0.8
2,092,132	+		ABZR87_RS09840	0.44	-0.5
2,092,132	+		ABZR87_RS09840	0.44	+0.6
2,092,132	+		ABZR87_RS09840	0.44	+0.2
2,092,133	-		ABZR87_RS09840	0.44	+1.5
2,092,133	-		ABZR87_RS09840	0.44	-1.1
2,092,133	-		ABZR87_RS09840	0.44	-0.1
2,092,133	-		ABZR87_RS09840	0.44	+1.4
2,092,133	-		ABZR87_RS09840	0.44	+0.2
2,092,133	-		ABZR87_RS09840	0.44	+0.7