Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09635

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,041,612	+		ABZR87_RS09625	0.55	+0.2
2,041,613	-		ABZR87_RS09625	0.55	+0.2
2,041,635	+		ABZR87_RS09625	0.57	+2.0
2,041,636	-		ABZR87_RS09625	0.57	-0.3
2,041,636	-		ABZR87_RS09625	0.57	-0.0
2,041,700	-		ABZR87_RS09625	0.64	+0.7
2,041,700	-		ABZR87_RS09625	0.64	-1.0
2,041,700	-		ABZR87_RS09625	0.64	+0.6
2,041,762	+		ABZR87_RS09625	0.71	+0.6
2,041,763	-		ABZR87_RS09625	0.71	-0.7
2,041,763	-		ABZR87_RS09625	0.71	+0.9
2,041,909	+		ABZR87_RS09625	0.86	+0.6
2,041,923	-		ABZR87_RS09625	0.88	-0.1
2,041,923	-		ABZR87_RS09625	0.88	-0.5
2,041,923	-		ABZR87_RS09625	0.88	-0.3
2,042,052	+				+0.3
2,042,052	+				-1.3
2,042,053	-				+1.3
2,042,147	+		ABZR87_RS09630	0.23	+0.5
2,042,291	+		ABZR87_RS09630	0.69	-1.0
2,042,291	+		ABZR87_RS09630	0.69	-0.7
2,042,291	+		ABZR87_RS09630	0.69	+1.4
2,042,292	-		ABZR87_RS09630	0.69	-0.0
2,042,292	-		ABZR87_RS09630	0.69	-1.2
2,042,292	-		ABZR87_RS09630	0.69	+0.2
2,042,292	-		ABZR87_RS09630	0.69	+0.5
2,042,406	+				+0.9
2,042,407	-				+0.5
2,042,407	-				+0.6
2,042,421	-				+0.5
2,042,421	-				+1.3
2,042,550	-		ABZR87_RS09635	0.14	-1.8
2,042,550	-		ABZR87_RS09635	0.14	-1.8
2,042,694	-		ABZR87_RS09635	0.29	-0.6
2,042,694	-		ABZR87_RS09635	0.29	-0.3
2,043,195	-		ABZR87_RS09635	0.82	-0.6
2,043,195	-		ABZR87_RS09635	0.82	-0.8
2,043,281	+				-1.3
2,043,281	+				+1.3
2,043,282	-				-0.7
2,043,421	+				-1.3
2,043,424	+				-1.5
2,043,424	+				-1.6
2,043,425	-				-0.5
2,043,425	-				-0.2
2,043,425	-				+0.5
2,043,436	+				+2.8
2,043,436	+				-1.3
2,043,437	-				+0.5
2,043,544	+		ABZR87_RS09640	0.14	-1.6
2,043,545	-		ABZR87_RS09640	0.14	-0.7
2,043,680	-		ABZR87_RS09640	0.25	-0.5
2,043,680	-		ABZR87_RS09640	0.25	-0.2
2,043,887	-		ABZR87_RS09640	0.42	-1.3
2,044,018	+		ABZR87_RS09640	0.52	+0.0
2,044,018	+		ABZR87_RS09640	0.52	+1.3
2,044,043	-		ABZR87_RS09640	0.54	+2.3
2,044,043	-		ABZR87_RS09640	0.54	-0.4
2,044,090	+		ABZR87_RS09640	0.58	+0.1
2,044,091	-		ABZR87_RS09640	0.58	+0.7
2,044,091	-		ABZR87_RS09640	0.58	-0.3
2,044,255	+		ABZR87_RS09640	0.71	-0.0
2,044,256	-		ABZR87_RS09640	0.71	-0.8
2,044,321	+		ABZR87_RS09640	0.76	-0.3