Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09620

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,040,097	-		ABZR87_RS09615	0.79	-1.7
2,040,099	+		ABZR87_RS09615	0.79	-0.3
2,040,100	-		ABZR87_RS09615	0.79	-1.0
2,040,177	+				+1.0
2,040,177	+				-0.2
2,040,178	-				+1.0
2,040,250	+				-1.2
2,040,250	+				-0.2
2,040,250	+				-0.1
2,040,250	+				+0.1
2,040,250	+				-1.6
2,040,250	+				-0.6
2,040,250	+				-1.5
2,040,250	+				+0.1
2,040,250	+				+0.1
2,040,250	+				-0.4
2,040,250	+				+1.4
2,040,250	+				+0.6
2,040,250	+				+1.4
2,040,250	+				-0.2
2,040,250	+				-2.0
2,040,250	+				-1.7
2,040,251	-				-0.2
2,040,251	-				-0.9
2,040,251	-				+0.8
2,040,251	-				-0.0
2,040,251	-				+0.4
2,040,251	-				+0.9
2,040,251	-				-0.3
2,040,251	-				+0.8
2,040,251	-				-0.1
2,040,251	-				-0.4
2,040,251	-				-0.1
2,040,251	-				+0.2
2,040,251	-				+0.6
2,040,251	-				-1.2
2,040,251	-				-0.0
2,040,251	-				-0.7
2,040,544	+		ABZR87_RS09620	0.37	+0.6
2,040,689	+		ABZR87_RS09620	0.57	-0.5
2,040,690	-		ABZR87_RS09620	0.58	+0.1
2,040,690	-		ABZR87_RS09620	0.58	+0.1
2,040,690	-		ABZR87_RS09620	0.58	+0.6
2,040,690	-		ABZR87_RS09620	0.58	+0.4
2,040,690	-		ABZR87_RS09620	0.58	+1.3
2,040,690	-		ABZR87_RS09620	0.58	+0.1
2,040,690	-		ABZR87_RS09620	0.58	+0.6
2,040,869	+		ABZR87_RS09620	0.83	+0.5
2,040,869	+		ABZR87_RS09620	0.83	-1.1
2,040,869	+		ABZR87_RS09620	0.83	+1.1
2,040,870	-		ABZR87_RS09620	0.83	-0.0
2,040,870	-		ABZR87_RS09620	0.83	+0.4
2,040,870	-		ABZR87_RS09620	0.83	-0.1
2,040,870	-		ABZR87_RS09620	0.83	-1.4
2,040,969	-				+1.0
2,040,969	-				+0.4
2,040,986	+				+0.6
2,041,002	-				+0.7
2,041,040	+				-0.7
2,041,040	+				-0.9
2,041,112	+				-0.7
2,041,112	+				-0.1
2,041,113	-				-0.7
2,041,113	-				+0.3
2,041,168	+				+0.7
2,041,168	+				+0.6
2,041,294	+		ABZR87_RS09625	0.21	-0.3
2,041,295	-		ABZR87_RS09625	0.21	-2.0
2,041,351	+		ABZR87_RS09625	0.27	+0.2
2,041,351	+		ABZR87_RS09625	0.27	-0.1
2,041,352	-		ABZR87_RS09625	0.27	-0.2
2,041,352	-		ABZR87_RS09625	0.27	-0.1
2,041,352	-		ABZR87_RS09625	0.27	-0.5
2,041,352	-		ABZR87_RS09625	0.27	-0.3
2,041,384	+		ABZR87_RS09625	0.31	+0.4
2,041,384	+		ABZR87_RS09625	0.31	+0.7
2,041,384	+		ABZR87_RS09625	0.31	-1.2
2,041,384	+		ABZR87_RS09625	0.31	+0.0
2,041,385	-		ABZR87_RS09625	0.31	+1.6
2,041,385	-		ABZR87_RS09625	0.31	-0.9
2,041,385	-		ABZR87_RS09625	0.31	-0.1
2,041,612	+		ABZR87_RS09625	0.55	+0.2
2,041,613	-		ABZR87_RS09625	0.55	+0.2
2,041,635	+		ABZR87_RS09625	0.57	+2.0
2,041,636	-		ABZR87_RS09625	0.57	-0.3
2,041,636	-		ABZR87_RS09625	0.57	-0.0
2,041,700	-		ABZR87_RS09625	0.64	+0.7
2,041,700	-		ABZR87_RS09625	0.64	-1.0
2,041,700	-		ABZR87_RS09625	0.64	+0.6
2,041,762	+		ABZR87_RS09625	0.71	+0.6
2,041,763	-		ABZR87_RS09625	0.71	-0.7
2,041,763	-		ABZR87_RS09625	0.71	+0.9
2,041,909	+		ABZR87_RS09625	0.86	+0.6
2,041,923	-		ABZR87_RS09625	0.88	-0.1
2,041,923	-		ABZR87_RS09625	0.88	-0.5
2,041,923	-		ABZR87_RS09625	0.88	-0.3