Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06920

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,463,442	+				-1.8
1,463,442	+				+0.8
1,463,442	+				+1.3
1,463,442	+				-0.1
1,463,442	+				-0.2
1,463,508	+				+0.0
1,463,508	+				-1.0
1,463,509	-				-0.4
1,463,509	-				+0.3
1,463,610	+		ABZR87_RS06915	0.12	+0.1
1,463,611	-		ABZR87_RS06915	0.12	-3.4
1,463,611	-		ABZR87_RS06915	0.12	-0.5
1,463,628	+		ABZR87_RS06915	0.15	-0.8
1,463,628	+		ABZR87_RS06915	0.15	-0.2
1,463,628	+		ABZR87_RS06915	0.15	+0.3
1,463,629	-		ABZR87_RS06915	0.15	-0.1
1,463,629	-		ABZR87_RS06915	0.15	-1.3
1,463,629	-		ABZR87_RS06915	0.15	-0.8
1,463,712	+		ABZR87_RS06915	0.26	+2.4
1,463,713	-		ABZR87_RS06915	0.27	-0.2
1,463,713	-		ABZR87_RS06915	0.27	+0.0
1,463,713	-		ABZR87_RS06915	0.27	-1.0
1,463,745	+		ABZR87_RS06915	0.31	+0.4
1,463,746	-		ABZR87_RS06915	0.31	-0.7
1,463,773	-		ABZR87_RS06915	0.35	-0.5
1,463,843	+		ABZR87_RS06915	0.45	-1.0
1,463,843	+		ABZR87_RS06915	0.45	+1.0
1,463,843	+		ABZR87_RS06915	0.45	-0.1
1,463,843	+		ABZR87_RS06915	0.45	-0.2
1,463,843	+		ABZR87_RS06915	0.45	-0.2
1,463,843	+		ABZR87_RS06915	0.45	+1.1
1,463,847	+		ABZR87_RS06915	0.46	-0.4
1,463,847	+		ABZR87_RS06915	0.46	+0.7
1,463,847	+		ABZR87_RS06915	0.46	+0.1
1,463,847	+		ABZR87_RS06915	0.46	+0.4
1,463,847	+		ABZR87_RS06915	0.46	-1.0
1,463,847	+		ABZR87_RS06915	0.46	-1.4
1,463,847	+		ABZR87_RS06915	0.46	+0.1
1,463,848	-		ABZR87_RS06915	0.46	+0.3
1,463,848	-		ABZR87_RS06915	0.46	-0.0
1,463,848	-		ABZR87_RS06915	0.46	+0.2
1,463,848	-		ABZR87_RS06915	0.46	-0.3
1,463,848	-		ABZR87_RS06915	0.46	-0.0
1,463,848	-		ABZR87_RS06915	0.46	-0.4
1,463,848	-		ABZR87_RS06915	0.46	+0.4
1,463,848	-		ABZR87_RS06915	0.46	+1.1
1,464,087	+		ABZR87_RS06915	0.80	+0.6
1,464,087	+		ABZR87_RS06915	0.80	+1.0
1,464,087	+		ABZR87_RS06915	0.80	+0.3
1,464,087	+		ABZR87_RS06915	0.80	-0.5
1,464,087	+		ABZR87_RS06915	0.80	+0.8
1,464,088	-		ABZR87_RS06915	0.80	+0.2
1,464,088	-		ABZR87_RS06915	0.80	-0.9
1,464,088	-		ABZR87_RS06915	0.80	+0.0
1,464,129	+		ABZR87_RS06915	0.86	+0.3
1,464,130	-		ABZR87_RS06915	0.86	-1.0
1,464,130	-		ABZR87_RS06915	0.86	-0.1
1,464,130	-		ABZR87_RS06915	0.86	-0.1
1,464,269	+				-1.9
1,464,269	+				-0.2
1,464,269	+				+0.1
1,464,270	-				+0.4
1,464,270	-				+2.2
1,464,270	-				-0.8
1,464,270	-				+1.9
1,464,275	+				-1.4
1,464,275	+				+1.1
1,464,276	-				+0.5
1,464,276	-				+0.1
1,464,335	+		ABZR87_RS06920	0.13	-0.8
1,464,341	+		ABZR87_RS06920	0.13	-0.8
1,464,471	-		ABZR87_RS06920	0.34	+0.4
1,464,471	-		ABZR87_RS06920	0.34	-0.3
1,464,600	-		ABZR87_RS06920	0.54	-1.3
1,464,719	+		ABZR87_RS06920	0.72	-0.5
1,464,719	+		ABZR87_RS06920	0.72	-0.1
1,464,719	+		ABZR87_RS06920	0.72	-1.9
1,464,809	+		ABZR87_RS06920	0.86	-1.1
1,464,841	+				+0.1
1,464,841	+				-0.8
1,464,841	+				+0.4
1,464,841	+				-0.0
1,464,841	+				-0.5
1,464,841	+				-0.7
1,464,841	+				-0.0
1,464,842	-				-2.8
1,464,842	-				-2.3
1,464,977	+				-0.6
1,464,977	+				+0.1
1,464,978	-				+0.3
1,464,978	-				-0.0
1,465,011	+				-0.5
1,465,012	-				-0.6
1,465,012	-				-0.1
1,465,012	-				+1.0
1,465,012	-				+0.0
1,465,076	+		ABZR87_RS06925	0.19	+0.4
1,465,077	-		ABZR87_RS06925	0.19	-0.1
1,465,148	+		ABZR87_RS06925	0.32	+0.9
1,465,148	+		ABZR87_RS06925	0.32	+0.1
1,465,158	+		ABZR87_RS06925	0.34	+0.3
1,465,159	-		ABZR87_RS06925	0.34	+0.7
1,465,195	+		ABZR87_RS06925	0.41	+0.4
1,465,195	+		ABZR87_RS06925	0.41	+0.3
1,465,285	+		ABZR87_RS06925	0.58	-1.5
1,465,285	+		ABZR87_RS06925	0.58	-0.1
1,465,286	-		ABZR87_RS06925	0.58	-0.4
1,465,286	-		ABZR87_RS06925	0.58	-0.6
1,465,365	+		ABZR87_RS06925	0.72	+1.4
1,465,365	+		ABZR87_RS06925	0.72	-0.1
1,465,388	+		ABZR87_RS06925	0.77	-0.2
1,465,388	+		ABZR87_RS06925	0.77	-0.2
1,465,389	-		ABZR87_RS06925	0.77	-1.4
1,465,427	+		ABZR87_RS06925	0.84	-0.6
1,465,427	+		ABZR87_RS06925	0.84	+0.4
1,465,428	-		ABZR87_RS06925	0.84	-0.3
1,465,428	-		ABZR87_RS06925	0.84	+0.2
1,465,428	-		ABZR87_RS06925	0.84	-0.1
1,465,428	-		ABZR87_RS06925	0.84	-0.8
1,465,478	+				-0.3
1,465,478	+				+0.9
1,465,478	+				-0.4
1,465,479	-				-0.6
1,465,479	-				+0.5
1,465,479	-				-0.5
1,465,479	-				-1.0
1,465,506	+				-1.9
1,465,506	+				-1.1
1,465,506	+				+0.3
1,465,506	+				-1.3
1,465,507	-				+1.3
1,465,507	-				+0.5
1,465,507	-				+1.2
1,465,589	-				-1.9
1,465,641	+				-1.0
1,465,654	+				-0.3
1,465,654	+				-0.8
1,465,655	-				-0.2
1,465,694	+				+0.1
1,465,708	+				-0.0
1,465,723	+				-0.1
1,465,724	-				-0.3
1,465,760	-				+0.3
1,465,760	-				+0.2
1,465,760	-				-0.3