Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06555

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,394,811	+		ABZR87_RS06550	0.36	-0.2
1,394,811	+		ABZR87_RS06550	0.36	-0.6
1,394,811	+		ABZR87_RS06550	0.36	-0.7
1,394,812	-		ABZR87_RS06550	0.36	-3.0
1,394,812	-		ABZR87_RS06550	0.36	-2.0
1,394,812	-		ABZR87_RS06550	0.36	-0.4
1,394,812	-		ABZR87_RS06550	0.36	-0.6
1,394,985	+		ABZR87_RS06550	0.52	+0.4
1,394,985	+		ABZR87_RS06550	0.52	-0.3
1,394,985	+		ABZR87_RS06550	0.52	-2.9
1,394,985	+		ABZR87_RS06550	0.52	+0.5
1,394,985	+		ABZR87_RS06550	0.52	-0.8
1,394,986	-		ABZR87_RS06550	0.52	-0.4
1,395,054	+		ABZR87_RS06550	0.58	-0.1
1,395,054	+		ABZR87_RS06550	0.58	-0.9
1,395,054	+		ABZR87_RS06550	0.58	-0.2
1,395,090	+		ABZR87_RS06550	0.62	-0.8
1,395,091	-		ABZR87_RS06550	0.62	+1.8
1,395,091	-		ABZR87_RS06550	0.62	-0.8
1,395,129	+		ABZR87_RS06550	0.65	-0.6
1,395,129	+		ABZR87_RS06550	0.65	-1.0
1,395,129	+		ABZR87_RS06550	0.65	-0.2
1,395,130	-		ABZR87_RS06550	0.65	-0.3
1,395,130	-		ABZR87_RS06550	0.65	-0.2
1,395,130	-		ABZR87_RS06550	0.65	-0.2
1,395,130	-		ABZR87_RS06550	0.65	+0.2
1,395,130	-		ABZR87_RS06550	0.65	-0.7
1,395,130	-		ABZR87_RS06550	0.65	-1.2
1,395,130	-		ABZR87_RS06550	0.65	-1.5
1,395,144	+		ABZR87_RS06550	0.67	-1.5
1,395,144	+		ABZR87_RS06550	0.67	-0.4
1,395,144	+		ABZR87_RS06550	0.67	-1.0
1,395,144	+		ABZR87_RS06550	0.67	-1.1
1,395,144	+		ABZR87_RS06550	0.67	-1.5
1,395,145	-		ABZR87_RS06550	0.67	-2.4
1,395,145	-		ABZR87_RS06550	0.67	-0.6
1,395,145	-		ABZR87_RS06550	0.67	-0.3
1,395,192	+		ABZR87_RS06550	0.71	+0.1
1,395,192	+		ABZR87_RS06550	0.71	-0.5
1,395,193	-		ABZR87_RS06550	0.71	-1.1
1,395,193	-		ABZR87_RS06550	0.71	-0.4
1,395,193	-		ABZR87_RS06550	0.71	-1.1
1,395,193	-		ABZR87_RS06550	0.71	-0.2
1,395,234	+		ABZR87_RS06550	0.75	-0.4
1,395,234	+		ABZR87_RS06550	0.75	-0.3
1,395,234	+		ABZR87_RS06550	0.75	-0.8
1,395,235	-		ABZR87_RS06550	0.75	-0.3
1,395,235	-		ABZR87_RS06550	0.75	-2.5
1,395,235	-		ABZR87_RS06550	0.75	-2.3
1,395,399	+				-1.9
1,395,399	+				-2.1
1,395,399	+				+0.2
1,395,400	-				-0.4
1,395,429	-				-0.1
1,395,518	+				-0.4
1,395,519	-				+0.2
1,395,519	-				+0.1
1,395,569	-				-1.9
1,395,569	-				-2.8
1,395,573	+				-0.7
1,395,573	+				+0.5
1,395,574	-				-0.1
1,395,588	+				-2.3
1,395,595	+				+0.6
1,395,595	+				-1.7
1,395,596	-				-2.1
1,395,685	+				+0.7
1,395,686	-				+0.1
1,395,693	+				-0.5
1,395,693	+				-0.5
1,395,693	+				-0.7
1,395,694	-				-0.4
1,395,694	-				-0.6
1,395,694	-				-0.9
1,395,730	+				-1.6
1,395,731	-				+0.1
1,395,731	-				+0.5
1,395,731	-				-0.9
1,395,731	-				+0.1
1,395,731	-				-0.2
1,395,795	-				-2.5
1,395,815	+				+0.0
1,395,816	-				-0.8
1,395,816	-				+0.8
1,395,837	+		ABZR87_RS06555	0.10	-0.9
1,395,837	+		ABZR87_RS06555	0.10	-0.5
1,395,837	+		ABZR87_RS06555	0.10	-0.2
1,395,837	+		ABZR87_RS06555	0.10	-1.2
1,395,837	+		ABZR87_RS06555	0.10	-1.7
1,395,837	+		ABZR87_RS06555	0.10	-1.0
1,395,837	+		ABZR87_RS06555	0.10	-0.1
1,395,837	+		ABZR87_RS06555	0.10	-1.8
1,395,837	+		ABZR87_RS06555	0.10	-1.2
1,395,837	+		ABZR87_RS06555	0.10	-0.7
1,395,837	+		ABZR87_RS06555	0.10	-1.1
1,395,837	+		ABZR87_RS06555	0.10	+0.6
1,395,837	+		ABZR87_RS06555	0.10	+1.8
1,395,838	-		ABZR87_RS06555	0.10	+0.7
1,395,838	-		ABZR87_RS06555	0.10	-0.4
1,395,838	-		ABZR87_RS06555	0.10	+0.1
1,395,838	-		ABZR87_RS06555	0.10	+0.1
1,395,838	-		ABZR87_RS06555	0.10	+1.2
1,395,845	+		ABZR87_RS06555	0.11	-0.0
1,395,845	+		ABZR87_RS06555	0.11	-1.8
1,395,845	+		ABZR87_RS06555	0.11	-1.3
1,395,846	-		ABZR87_RS06555	0.11	-0.3
1,395,846	-		ABZR87_RS06555	0.11	-0.1
1,395,846	-		ABZR87_RS06555	0.11	+0.2
1,395,846	-		ABZR87_RS06555	0.11	+0.2
1,395,870	+		ABZR87_RS06555	0.12	-1.6
1,396,203	+		ABZR87_RS06555	0.35	+1.3
1,396,203	+		ABZR87_RS06555	0.35	-0.8
1,396,203	+		ABZR87_RS06555	0.35	+0.0
1,396,203	+		ABZR87_RS06555	0.35	-0.1
1,396,203	+		ABZR87_RS06555	0.35	-0.9
1,396,203	+		ABZR87_RS06555	0.35	-1.1
1,396,204	-		ABZR87_RS06555	0.35	+0.0
1,396,204	-		ABZR87_RS06555	0.35	+0.1
1,396,204	-		ABZR87_RS06555	0.35	+0.1
1,396,204	-		ABZR87_RS06555	0.35	+1.1
1,396,204	-		ABZR87_RS06555	0.35	-1.2
1,396,204	-		ABZR87_RS06555	0.35	-1.0
1,396,204	-		ABZR87_RS06555	0.35	+1.3
1,396,204	-		ABZR87_RS06555	0.35	+0.0
1,396,204	-		ABZR87_RS06555	0.35	-0.5
1,396,204	-		ABZR87_RS06555	0.35	-1.1
1,396,294	-		ABZR87_RS06555	0.42	-0.6
1,396,294	-		ABZR87_RS06555	0.42	+0.3
1,396,344	+		ABZR87_RS06555	0.45	-0.4
1,396,344	+		ABZR87_RS06555	0.45	+1.8
1,396,345	-		ABZR87_RS06555	0.45	-1.5
1,396,345	-		ABZR87_RS06555	0.45	+0.4
1,396,599	+		ABZR87_RS06555	0.63	-0.5
1,396,599	+		ABZR87_RS06555	0.63	-0.6
1,396,599	+		ABZR87_RS06555	0.63	-0.3
1,396,599	+		ABZR87_RS06555	0.63	-2.1
1,396,599	+		ABZR87_RS06555	0.63	-0.0
1,396,599	+		ABZR87_RS06555	0.63	-0.8
1,396,599	+		ABZR87_RS06555	0.63	+0.1
1,396,600	-		ABZR87_RS06555	0.63	-1.6
1,396,731	+		ABZR87_RS06555	0.72	+0.6
1,396,908	+		ABZR87_RS06555	0.84	-0.6
1,396,965	+		ABZR87_RS06555	0.88	-0.0
1,396,966	-		ABZR87_RS06555	0.88	+0.8
1,397,012	+				-0.8
1,397,012	+				-1.9
1,397,012	+				-0.9
1,397,149	-				-0.6
1,397,149	-				-1.5
1,397,170	+				-1.5
1,397,170	+				-0.9
1,397,170	+				-0.6
1,397,173	-				+0.8
1,397,216	+				-2.0
1,397,245	-				-1.6
1,397,254	+				-0.3
1,397,254	+				-0.6
1,397,255	-				-0.5
1,397,255	-				-1.1
1,397,259	+				+0.3
1,397,260	-				-0.0
1,397,260	-				-0.8
1,397,305	+				+0.4
1,397,343	-				-1.9
1,397,343	-				-0.2
1,397,397	+				+0.3
1,397,398	-				-0.9
1,397,404	+				+0.5
1,397,405	-				-0.6
1,397,405	-				-0.3
1,397,468	+				+0.0
1,397,468	+				-1.3
1,397,468	+				-0.1
1,397,468	+				+0.8
1,397,468	+				+2.7
1,397,468	+				-0.4
1,397,468	+				-2.6
1,397,468	+				-0.2
1,397,468	+				-0.9
1,397,468	+				-1.1
1,397,468	+				-1.3
1,397,468	+				-0.3
1,397,469	-				-0.7
1,397,469	-				-1.0
1,397,469	-				-1.4
1,397,469	-				-0.6
1,397,469	-				-2.3
1,397,469	-				+0.1
1,397,470	+				+0.1
1,397,471	-				-0.2
1,397,471	-				-1.3
1,397,787	-		ABZR87_RS06560	0.25	-0.8
1,397,877	+		ABZR87_RS06560	0.31	-3.1
1,397,877	+		ABZR87_RS06560	0.31	-2.3
1,397,878	-		ABZR87_RS06560	0.31	-0.6
1,397,878	-		ABZR87_RS06560	0.31	-1.4
1,397,878	-		ABZR87_RS06560	0.31	-2.0
1,397,878	-		ABZR87_RS06560	0.31	-1.9
1,397,903	+		ABZR87_RS06560	0.33	-0.8
1,397,903	+		ABZR87_RS06560	0.33	-0.1
1,397,903	+		ABZR87_RS06560	0.33	-0.8