Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06065

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
1,294,891	+		ABZR87_RS06060	0.63	+2.1
1,294,891	+		ABZR87_RS06060	0.63	-0.3
1,294,891	+		ABZR87_RS06060	0.63	+0.4
1,294,891	+		ABZR87_RS06060	0.63	-0.7
1,294,891	+		ABZR87_RS06060	0.63	+0.9
1,294,892	-		ABZR87_RS06060	0.63	-0.7
1,294,892	-		ABZR87_RS06060	0.63	+0.7
1,294,892	-		ABZR87_RS06060	0.63	+0.5
1,294,892	-		ABZR87_RS06060	0.63	-0.7
1,294,892	-		ABZR87_RS06060	0.63	-0.2
1,294,892	-		ABZR87_RS06060	0.63	+1.5
1,294,892	-		ABZR87_RS06060	0.63	+0.8
1,295,141	-				+0.4
1,295,541	+		ABZR87_RS06065	0.33	-0.8
1,295,542	-		ABZR87_RS06065	0.33	+2.2
1,295,585	+		ABZR87_RS06065	0.38	+1.0
1,295,585	+		ABZR87_RS06065	0.38	+0.3
1,295,585	+		ABZR87_RS06065	0.38	+0.3
1,295,586	-		ABZR87_RS06065	0.38	-0.1
1,295,586	-		ABZR87_RS06065	0.38	-0.5
1,295,586	-		ABZR87_RS06065	0.38	-0.1
1,295,586	-		ABZR87_RS06065	0.38	+0.2
1,295,586	-		ABZR87_RS06065	0.38	-1.3
1,295,586	-		ABZR87_RS06065	0.38	+0.3
1,295,597	+		ABZR87_RS06065	0.39	-0.8
1,295,597	+		ABZR87_RS06065	0.39	+0.8
1,295,597	+		ABZR87_RS06065	0.39	-1.2
1,295,597	+		ABZR87_RS06065	0.39	-0.3
1,295,597	+		ABZR87_RS06065	0.39	-1.3
1,295,597	+		ABZR87_RS06065	0.39	+0.8
1,295,597	+		ABZR87_RS06065	0.39	+0.5
1,295,597	+		ABZR87_RS06065	0.39	+0.2
1,295,597	+		ABZR87_RS06065	0.39	-0.4
1,295,598	-		ABZR87_RS06065	0.39	+0.2
1,295,598	-		ABZR87_RS06065	0.39	+1.2
1,295,598	-		ABZR87_RS06065	0.39	+0.8
1,295,598	-		ABZR87_RS06065	0.39	+0.2
1,295,624	+		ABZR87_RS06065	0.42	+0.2
1,295,624	+		ABZR87_RS06065	0.42	+0.5
1,295,624	+		ABZR87_RS06065	0.42	+0.5
1,295,882	+		ABZR87_RS06065	0.69	+0.4
1,295,882	+		ABZR87_RS06065	0.69	+0.1
1,295,883	-		ABZR87_RS06065	0.69	+0.5
1,295,883	-		ABZR87_RS06065	0.69	-1.6
1,295,883	-		ABZR87_RS06065	0.69	+0.5
1,295,883	-		ABZR87_RS06065	0.69	+0.3
1,295,883	-		ABZR87_RS06065	0.69	+0.1
1,295,913	-		ABZR87_RS06065	0.72	-0.4
1,295,951	+		ABZR87_RS06065	0.76	+1.2
1,295,951	+		ABZR87_RS06065	0.76	+0.2
1,295,951	+		ABZR87_RS06065	0.76	+0.1
1,296,217	+				-0.1
1,296,217	+				-1.6
1,296,217	+				-1.1
1,296,217	+				+0.1
1,296,217	+				+0.8
1,296,217	+				+0.2
1,296,218	-				-0.2
1,296,218	-				-2.3
1,296,274	+				+0.3
1,296,274	+				-0.8
1,296,274	+				-0.7
1,296,274	+				+2.4
1,296,275	-				-0.4
1,296,367	+		ABZR87_RS06070	0.15	-0.6
1,296,368	-		ABZR87_RS06070	0.15	-0.6
1,296,379	+		ABZR87_RS06070	0.16	-0.5
1,296,421	+		ABZR87_RS06070	0.19	+0.3
1,296,422	-		ABZR87_RS06070	0.19	-0.3
1,296,422	-		ABZR87_RS06070	0.19	+1.8
1,296,424	+		ABZR87_RS06070	0.19	-0.7
1,296,425	-		ABZR87_RS06070	0.19	+0.2
1,296,442	+		ABZR87_RS06070	0.21	+4.4
1,296,442	+		ABZR87_RS06070	0.21	+1.3
1,296,443	-		ABZR87_RS06070	0.21	+0.3
1,296,484	+		ABZR87_RS06070	0.24	+0.6
1,296,550	+		ABZR87_RS06070	0.29	-0.0
1,296,775	+		ABZR87_RS06070	0.47	+0.3
1,296,775	+		ABZR87_RS06070	0.47	-0.7
1,296,776	-		ABZR87_RS06070	0.47	+0.9
1,296,776	-		ABZR87_RS06070	0.47	+0.5
1,296,776	-		ABZR87_RS06070	0.47	+0.7
1,296,943	+		ABZR87_RS06070	0.60	-1.7
1,296,944	-		ABZR87_RS06070	0.60	-1.5
1,296,944	-		ABZR87_RS06070	0.60	-0.4
1,297,015	+		ABZR87_RS06070	0.66	-0.5
1,297,015	+		ABZR87_RS06070	0.66	-0.6
1,297,016	-		ABZR87_RS06070	0.66	-3.0
1,297,016	-		ABZR87_RS06070	0.66	+0.6
1,297,016	-		ABZR87_RS06070	0.66	+0.4
1,297,016	-		ABZR87_RS06070	0.66	+0.5
1,297,171	+		ABZR87_RS06070	0.78	-0.6
1,297,171	+		ABZR87_RS06070	0.78	-0.2
1,297,171	+		ABZR87_RS06070	0.78	-0.1
1,297,172	-		ABZR87_RS06070	0.78	-0.8