Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05590

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05585 and ABZR87_RS05590 are separated by 600 nucleotidesABZR87_RS05590 and ABZR87_RS05595 are separated by 32 nucleotidesABZR87_RS05595 and ABZR87_RS05600 are separated by 127 nucleotides ABZR87_RS05585: ABZR87_RS05585 - polyphosphate kinase 2 family protein, at 1,187,086 to 1,187,913 _RS05585 ABZR87_RS05590: ABZR87_RS05590 - orotate phosphoribosyltransferase, at 1,188,514 to 1,189,191 _RS05590 ABZR87_RS05595: ABZR87_RS05595 - exodeoxyribonuclease III, at 1,189,224 to 1,190,009 _RS05595 ABZR87_RS05600: ABZR87_RS05600 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,190,137 to 1,191,150 _RS05600 Position (kb) 1188 1189 1190Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1187.546 kb on - strand, within ABZR87_RS05585at 1187.616 kb on + strand, within ABZR87_RS05585at 1187.616 kb on + strand, within ABZR87_RS05585at 1187.616 kb on + strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.617 kb on - strand, within ABZR87_RS05585at 1187.697 kb on + strand, within ABZR87_RS05585at 1187.697 kb on + strand, within ABZR87_RS05585at 1187.698 kb on - strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.725 kb on + strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.726 kb on - strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.727 kb on + strand, within ABZR87_RS05585at 1187.728 kb on - strand, within ABZR87_RS05585at 1187.728 kb on - strand, within ABZR87_RS05585at 1187.728 kb on - strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.737 kb on + strand, within ABZR87_RS05585at 1187.738 kb on - strand, within ABZR87_RS05585at 1187.738 kb on - strand, within ABZR87_RS05585at 1187.738 kb on - strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.782 kb on + strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.783 kb on - strand, within ABZR87_RS05585at 1187.869 kb on + strandat 1187.869 kb on + strandat 1188.256 kb on - strandat 1188.256 kb on - strandat 1188.533 kb on + strandat 1188.533 kb on + strandat 1188.534 kb on - strandat 1188.534 kb on - strandat 1188.534 kb on - strandat 1188.537 kb on + strandat 1188.537 kb on + strandat 1188.537 kb on + strandat 1188.537 kb on + strandat 1188.537 kb on + strandat 1188.538 kb on - strandat 1188.567 kb on - strandat 1188.602 kb on + strand, within ABZR87_RS05590at 1188.603 kb on - strand, within ABZR87_RS05590at 1188.624 kb on + strand, within ABZR87_RS05590at 1188.690 kb on + strand, within ABZR87_RS05590at 1188.690 kb on + strand, within ABZR87_RS05590at 1188.896 kb on + strand, within ABZR87_RS05590at 1188.968 kb on + strand, within ABZR87_RS05590at 1188.969 kb on - strand, within ABZR87_RS05590at 1189.025 kb on + strand, within ABZR87_RS05590at 1189.026 kb on - strand, within ABZR87_RS05590at 1189.086 kb on - strand, within ABZR87_RS05590at 1189.228 kb on + strandat 1189.229 kb on - strandat 1189.229 kb on - strandat 1189.229 kb on - strandat 1189.229 kb on - strandat 1189.383 kb on + strand, within ABZR87_RS05595at 1189.383 kb on + strand, within ABZR87_RS05595at 1189.384 kb on - strand, within ABZR87_RS05595at 1189.419 kb on + strand, within ABZR87_RS05595at 1189.420 kb on - strand, within ABZR87_RS05595at 1189.437 kb on + strand, within ABZR87_RS05595at 1189.437 kb on + strand, within ABZR87_RS05595at 1189.437 kb on + strand, within ABZR87_RS05595at 1189.437 kb on + strand, within ABZR87_RS05595at 1189.437 kb on + strand, within ABZR87_RS05595at 1189.437 kb on + strand, within ABZR87_RS05595at 1189.437 kb on + strand, within ABZR87_RS05595at 1189.438 kb on - strand, within ABZR87_RS05595at 1189.438 kb on - strand, within ABZR87_RS05595at 1189.438 kb on - strand, within ABZR87_RS05595at 1189.438 kb on - strand, within ABZR87_RS05595at 1189.506 kb on + strand, within ABZR87_RS05595at 1189.548 kb on + strand, within ABZR87_RS05595at 1189.548 kb on + strand, within ABZR87_RS05595at 1189.549 kb on - strand, within ABZR87_RS05595at 1189.549 kb on - strand, within ABZR87_RS05595at 1189.788 kb on + strand, within ABZR87_RS05595at 1189.788 kb on + strand, within ABZR87_RS05595at 1189.789 kb on - strand, within ABZR87_RS05595at 1189.789 kb on - strand, within ABZR87_RS05595at 1189.789 kb on - strand, within ABZR87_RS05595at 1189.789 kb on - strand, within ABZR87_RS05595at 1189.789 kb on - strand, within ABZR87_RS05595at 1189.830 kb on + strand, within ABZR87_RS05595at 1189.830 kb on + strand, within ABZR87_RS05595at 1189.830 kb on + strand, within ABZR87_RS05595at 1189.830 kb on + strand, within ABZR87_RS05595at 1189.830 kb on + strand, within ABZR87_RS05595at 1189.830 kb on + strand, within ABZR87_RS05595at 1189.830 kb on + strand, within ABZR87_RS05595at 1189.830 kb on + strand, within ABZR87_RS05595at 1189.830 kb on + strand, within ABZR87_RS05595at 1189.830 kb on + strand, within ABZR87_RS05595at 1189.831 kb on - strand, within ABZR87_RS05595at 1189.831 kb on - strand, within ABZR87_RS05595at 1189.831 kb on - strand, within ABZR87_RS05595at 1189.831 kb on - strand, within ABZR87_RS05595at 1189.831 kb on - strand, within ABZR87_RS05595at 1189.831 kb on - strand, within ABZR87_RS05595at 1189.860 kb on + strand, within ABZR87_RS05595at 1189.860 kb on + strand, within ABZR87_RS05595at 1189.860 kb on + strand, within ABZR87_RS05595at 1189.861 kb on - strand, within ABZR87_RS05595at 1189.861 kb on - strand, within ABZR87_RS05595at 1189.861 kb on - strand, within ABZR87_RS05595at 1189.861 kb on - strand, within ABZR87_RS05595at 1189.861 kb on - strand, within ABZR87_RS05595at 1189.883 kb on + strand, within ABZR87_RS05595at 1189.883 kb on + strand, within ABZR87_RS05595at 1189.884 kb on - strand, within ABZR87_RS05595at 1189.986 kb on + strandat 1189.986 kb on + strandat 1189.987 kb on - strandat 1189.987 kb on - strandat 1189.987 kb on - strandat 1190.008 kb on - strandat 1190.008 kb on - strandat 1190.063 kb on + strandat 1190.063 kb on + strandat 1190.064 kb on - strandat 1190.064 kb on - strandat 1190.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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1,187,546 - ABZR87_RS05585 0.56 -1.2
1,187,616 + ABZR87_RS05585 0.64 +1.1
1,187,616 + ABZR87_RS05585 0.64 -0.1
1,187,616 + ABZR87_RS05585 0.64 -0.7
1,187,617 - ABZR87_RS05585 0.64 +0.0
1,187,617 - ABZR87_RS05585 0.64 -0.7
1,187,617 - ABZR87_RS05585 0.64 -0.9
1,187,617 - ABZR87_RS05585 0.64 -1.4
1,187,617 - ABZR87_RS05585 0.64 -0.3
1,187,617 - ABZR87_RS05585 0.64 -0.0
1,187,697 + ABZR87_RS05585 0.74 -0.0
1,187,697 + ABZR87_RS05585 0.74 +0.6
1,187,698 - ABZR87_RS05585 0.74 -0.8
1,187,725 + ABZR87_RS05585 0.77 +0.0
1,187,725 + ABZR87_RS05585 0.77 -0.3
1,187,725 + ABZR87_RS05585 0.77 +0.2
1,187,725 + ABZR87_RS05585 0.77 +0.1
1,187,725 + ABZR87_RS05585 0.77 -1.8
1,187,725 + ABZR87_RS05585 0.77 -0.2
1,187,725 + ABZR87_RS05585 0.77 -0.7
1,187,725 + ABZR87_RS05585 0.77 +0.1
1,187,725 + ABZR87_RS05585 0.77 -0.7
1,187,725 + ABZR87_RS05585 0.77 -2.5
1,187,725 + ABZR87_RS05585 0.77 +0.8
1,187,725 + ABZR87_RS05585 0.77 +2.8
1,187,725 + ABZR87_RS05585 0.77 -1.5
1,187,726 - ABZR87_RS05585 0.77 -1.7
1,187,726 - ABZR87_RS05585 0.77 -0.1
1,187,726 - ABZR87_RS05585 0.77 +0.2
1,187,726 - ABZR87_RS05585 0.77 +0.7
1,187,726 - ABZR87_RS05585 0.77 +0.0
1,187,726 - ABZR87_RS05585 0.77 -0.1
1,187,726 - ABZR87_RS05585 0.77 -0.7
1,187,726 - ABZR87_RS05585 0.77 -0.6
1,187,726 - ABZR87_RS05585 0.77 -0.2
1,187,726 - ABZR87_RS05585 0.77 +1.3
1,187,726 - ABZR87_RS05585 0.77 -0.2
1,187,726 - ABZR87_RS05585 0.77 -1.1
1,187,726 - ABZR87_RS05585 0.77 +0.8
1,187,727 + ABZR87_RS05585 0.77 -0.3
1,187,727 + ABZR87_RS05585 0.77 +0.3
1,187,727 + ABZR87_RS05585 0.77 +0.3
1,187,727 + ABZR87_RS05585 0.77 +0.0
1,187,727 + ABZR87_RS05585 0.77 -0.4
1,187,727 + ABZR87_RS05585 0.77 -0.2
1,187,727 + ABZR87_RS05585 0.77 +0.3
1,187,727 + ABZR87_RS05585 0.77 +1.4
1,187,728 - ABZR87_RS05585 0.78 -0.1
1,187,728 - ABZR87_RS05585 0.78 +1.4
1,187,728 - ABZR87_RS05585 0.78 -0.1
1,187,737 + ABZR87_RS05585 0.79 -1.7
1,187,737 + ABZR87_RS05585 0.79 +0.0
1,187,737 + ABZR87_RS05585 0.79 -0.4
1,187,737 + ABZR87_RS05585 0.79 -0.5
1,187,738 - ABZR87_RS05585 0.79 +0.6
1,187,738 - ABZR87_RS05585 0.79 -1.0
1,187,738 - ABZR87_RS05585 0.79 -0.4
1,187,782 + ABZR87_RS05585 0.84 -0.2
1,187,782 + ABZR87_RS05585 0.84 -2.7
1,187,782 + ABZR87_RS05585 0.84 -0.9
1,187,782 + ABZR87_RS05585 0.84 -0.4
1,187,782 + ABZR87_RS05585 0.84 +0.4
1,187,782 + ABZR87_RS05585 0.84 +0.5
1,187,782 + ABZR87_RS05585 0.84 -0.1
1,187,782 + ABZR87_RS05585 0.84 +0.2
1,187,782 + ABZR87_RS05585 0.84 +0.2
1,187,782 + ABZR87_RS05585 0.84 +1.1
1,187,782 + ABZR87_RS05585 0.84 +0.3
1,187,783 - ABZR87_RS05585 0.84 -1.8
1,187,783 - ABZR87_RS05585 0.84 -0.3
1,187,783 - ABZR87_RS05585 0.84 -0.6
1,187,783 - ABZR87_RS05585 0.84 -0.6
1,187,783 - ABZR87_RS05585 0.84 -1.6
1,187,783 - ABZR87_RS05585 0.84 +0.4
1,187,783 - ABZR87_RS05585 0.84 -1.5
1,187,783 - ABZR87_RS05585 0.84 +0.3
1,187,783 - ABZR87_RS05585 0.84 +0.1
1,187,783 - ABZR87_RS05585 0.84 +0.0
1,187,869 + +1.5
1,187,869 + -1.1
1,188,256 - +0.1
1,188,256 - -0.2
1,188,533 + -1.7
1,188,533 + -1.5
1,188,534 - -0.9
1,188,534 - -0.6
1,188,534 - -0.5
1,188,537 + -0.1
1,188,537 + +0.9
1,188,537 + -1.8
1,188,537 + -0.2
1,188,537 + -1.0
1,188,538 - -0.7
1,188,567 - -1.4
1,188,602 + ABZR87_RS05590 0.13 +1.8
1,188,603 - ABZR87_RS05590 0.13 -0.8
1,188,624 + ABZR87_RS05590 0.16 +1.8
1,188,690 + ABZR87_RS05590 0.26 +0.8
1,188,690 + ABZR87_RS05590 0.26 -0.2
1,188,896 + ABZR87_RS05590 0.56 +0.8
1,188,968 + ABZR87_RS05590 0.67 +0.8
1,188,969 - ABZR87_RS05590 0.67 +1.8
1,189,025 + ABZR87_RS05590 0.75 +0.8
1,189,026 - ABZR87_RS05590 0.76 -1.0
1,189,086 - ABZR87_RS05590 0.84 +1.8
1,189,228 + -1.3
1,189,229 - -0.7
1,189,229 - +0.8
1,189,229 - -1.4
1,189,229 - +0.5
1,189,383 + ABZR87_RS05595 0.20 -0.3
1,189,383 + ABZR87_RS05595 0.20 -1.4
1,189,384 - ABZR87_RS05595 0.20 -0.5
1,189,419 + ABZR87_RS05595 0.25 -1.1
1,189,420 - ABZR87_RS05595 0.25 +0.8
1,189,437 + ABZR87_RS05595 0.27 -0.9
1,189,437 + ABZR87_RS05595 0.27 -0.7
1,189,437 + ABZR87_RS05595 0.27 +0.0
1,189,437 + ABZR87_RS05595 0.27 +0.0
1,189,437 + ABZR87_RS05595 0.27 -1.2
1,189,437 + ABZR87_RS05595 0.27 +0.6
1,189,437 + ABZR87_RS05595 0.27 -0.3
1,189,438 - ABZR87_RS05595 0.27 -0.1
1,189,438 - ABZR87_RS05595 0.27 +0.6
1,189,438 - ABZR87_RS05595 0.27 -2.2
1,189,438 - ABZR87_RS05595 0.27 -1.1
1,189,506 + ABZR87_RS05595 0.36 +0.2
1,189,548 + ABZR87_RS05595 0.41 -0.3
1,189,548 + ABZR87_RS05595 0.41 +0.2
1,189,549 - ABZR87_RS05595 0.41 +0.2
1,189,549 - ABZR87_RS05595 0.41 +0.4
1,189,788 + ABZR87_RS05595 0.72 +0.4
1,189,788 + ABZR87_RS05595 0.72 -0.0
1,189,789 - ABZR87_RS05595 0.72 -1.9
1,189,789 - ABZR87_RS05595 0.72 +0.4
1,189,789 - ABZR87_RS05595 0.72 -0.5
1,189,789 - ABZR87_RS05595 0.72 +0.2
1,189,789 - ABZR87_RS05595 0.72 +0.1
1,189,830 + ABZR87_RS05595 0.77 -0.2
1,189,830 + ABZR87_RS05595 0.77 +0.9
1,189,830 + ABZR87_RS05595 0.77 +0.3
1,189,830 + ABZR87_RS05595 0.77 +0.6
1,189,830 + ABZR87_RS05595 0.77 -0.6
1,189,830 + ABZR87_RS05595 0.77 -1.6
1,189,830 + ABZR87_RS05595 0.77 +1.3
1,189,830 + ABZR87_RS05595 0.77 -1.0
1,189,830 + ABZR87_RS05595 0.77 -1.2
1,189,830 + ABZR87_RS05595 0.77 -0.4
1,189,831 - ABZR87_RS05595 0.77 +1.2
1,189,831 - ABZR87_RS05595 0.77 +0.2
1,189,831 - ABZR87_RS05595 0.77 -0.1
1,189,831 - ABZR87_RS05595 0.77 -0.8
1,189,831 - ABZR87_RS05595 0.77 -0.4
1,189,831 - ABZR87_RS05595 0.77 +0.3
1,189,860 + ABZR87_RS05595 0.81 -0.4
1,189,860 + ABZR87_RS05595 0.81 -1.2
1,189,860 + ABZR87_RS05595 0.81 +0.3
1,189,861 - ABZR87_RS05595 0.81 +0.2
1,189,861 - ABZR87_RS05595 0.81 +0.5
1,189,861 - ABZR87_RS05595 0.81 +1.8
1,189,861 - ABZR87_RS05595 0.81 -0.7
1,189,861 - ABZR87_RS05595 0.81 -0.8
1,189,883 + ABZR87_RS05595 0.84 -0.6
1,189,883 + ABZR87_RS05595 0.84 +0.0
1,189,884 - ABZR87_RS05595 0.84 -0.1
1,189,986 + -0.9
1,189,986 + -2.0
1,189,987 - +0.0
1,189,987 - +0.2
1,189,987 - +0.0
1,190,008 - +0.8
1,190,008 - -2.0
1,190,063 + -0.4
1,190,063 + +0.1
1,190,064 - +0.3
1,190,064 - -0.9
1,190,064 - -0.5

Or see this region's nucleotide sequence