Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04510 and ABZR87_RS04515 are separated by 158 nucleotides ABZR87_RS04515 and ABZR87_RS04520 are separated by 15 nucleotides
ABZR87_RS04510: ABZR87_RS04510 - potassium-transporting ATPase subunit KdpA, at 939,079 to 940,851
_RS04510
ABZR87_RS04515: ABZR87_RS04515 - potassium-transporting ATPase subunit KdpB, at 941,010 to 943,235
_RS04515
ABZR87_RS04520: ABZR87_RS04520 - potassium-transporting ATPase subunit KdpC, at 943,251 to 943,874
_RS04520
Position (kb) 941
942
943
944 Strain fitness (log2 ratio) -2
-1
0
1
2 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.330 kb on + strand, within ABZR87_RS04510 at 940.331 kb on - strand, within ABZR87_RS04510 at 940.374 kb on + strand, within ABZR87_RS04510 at 940.374 kb on + strand, within ABZR87_RS04510 at 940.385 kb on - strand, within ABZR87_RS04510 at 940.385 kb on - strand, within ABZR87_RS04510 at 940.546 kb on + strand, within ABZR87_RS04510 at 940.547 kb on - strand, within ABZR87_RS04510 at 940.547 kb on - strand, within ABZR87_RS04510 at 940.547 kb on - strand, within ABZR87_RS04510 at 940.615 kb on + strand, within ABZR87_RS04510 at 940.615 kb on + strand, within ABZR87_RS04510 at 940.616 kb on - strand, within ABZR87_RS04510 at 940.801 kb on + strand at 940.801 kb on + strand at 940.801 kb on + strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.802 kb on - strand at 940.870 kb on - strand at 940.907 kb on + strand at 940.908 kb on - strand at 940.908 kb on - strand at 940.908 kb on - strand at 940.915 kb on + strand at 940.915 kb on + strand at 940.916 kb on - strand at 940.983 kb on - strand at 940.994 kb on + strand at 940.995 kb on - strand at 941.009 kb on + strand at 941.009 kb on + strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.010 kb on - strand at 941.015 kb on + strand at 941.082 kb on - strand at 941.087 kb on + strand at 941.087 kb on + strand at 941.087 kb on + strand at 941.088 kb on - strand at 941.126 kb on + strand at 941.126 kb on + strand at 941.127 kb on - strand at 941.127 kb on - strand at 941.127 kb on - strand at 941.210 kb on + strand at 941.211 kb on - strand at 941.268 kb on + strand, within ABZR87_RS04515 at 941.269 kb on - strand, within ABZR87_RS04515 at 941.874 kb on + strand, within ABZR87_RS04515 at 941.874 kb on + strand, within ABZR87_RS04515 at 941.924 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.294 kb on + strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.295 kb on - strand, within ABZR87_RS04515 at 942.342 kb on + strand, within ABZR87_RS04515 at 942.342 kb on + strand, within ABZR87_RS04515 at 942.342 kb on + strand, within ABZR87_RS04515 at 942.343 kb on - strand, within ABZR87_RS04515 at 942.343 kb on - strand, within ABZR87_RS04515 at 942.945 kb on + strand, within ABZR87_RS04515 at 942.945 kb on + strand, within ABZR87_RS04515 at 942.945 kb on + strand, within ABZR87_RS04515 at 942.981 kb on + strand, within ABZR87_RS04515 at 942.981 kb on + strand, within ABZR87_RS04515 at 943.107 kb on + strand at 943.155 kb on + strand at 943.156 kb on - strand at 943.156 kb on - strand at 943.156 kb on - strand at 943.233 kb on + strand at 943.233 kb on + strand at 943.333 kb on + strand, within ABZR87_RS04520 at 943.333 kb on + strand, within ABZR87_RS04520 at 943.333 kb on + strand, within ABZR87_RS04520 at 943.368 kb on + strand, within ABZR87_RS04520 at 943.494 kb on + strand, within ABZR87_RS04520 at 943.494 kb on + strand, within ABZR87_RS04520 at 943.494 kb on + strand, within ABZR87_RS04520 at 943.495 kb on - strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.533 kb on + strand, within ABZR87_RS04520 at 943.534 kb on - strand, within ABZR87_RS04520 at 943.534 kb on - strand, within ABZR87_RS04520 at 943.571 kb on + strand, within ABZR87_RS04520 at 943.700 kb on + strand, within ABZR87_RS04520 at 943.700 kb on + strand, within ABZR87_RS04520 at 943.701 kb on - strand, within ABZR87_RS04520 at 943.701 kb on - strand, within ABZR87_RS04520 at 943.720 kb on - strand, within ABZR87_RS04520 at 943.720 kb on - strand, within ABZR87_RS04520 at 943.826 kb on + strand at 943.826 kb on + strand at 943.826 kb on + strand at 943.827 kb on - strand at 943.979 kb on + strand at 944.222 kb on + strand at 944.222 kb on + strand at 944.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 940,330 + ABZR87_RS04510 0.71 +0.4 940,330 + ABZR87_RS04510 0.71 +0.0 940,330 + ABZR87_RS04510 0.71 -0.6 940,330 + ABZR87_RS04510 0.71 +0.1 940,331 - ABZR87_RS04510 0.71 +0.4 940,374 + ABZR87_RS04510 0.73 -0.9 940,374 + ABZR87_RS04510 0.73 -0.5 940,385 - ABZR87_RS04510 0.74 -1.0 940,385 - ABZR87_RS04510 0.74 -0.5 940,546 + ABZR87_RS04510 0.83 -0.6 940,547 - ABZR87_RS04510 0.83 -0.1 940,547 - ABZR87_RS04510 0.83 -0.7 940,547 - ABZR87_RS04510 0.83 +0.1 940,615 + ABZR87_RS04510 0.87 -0.2 940,615 + ABZR87_RS04510 0.87 -0.3 940,616 - ABZR87_RS04510 0.87 +0.1 940,801 + -0.0 940,801 + -0.6 940,801 + -0.9 940,802 - -0.5 940,802 - +0.7 940,802 - -0.5 940,802 - -1.4 940,802 - +1.7 940,870 - -0.7 940,907 + +0.3 940,908 - +0.2 940,908 - +0.2 940,908 - -0.3 940,915 + -0.1 940,915 + -0.7 940,916 - -0.6 940,983 - -0.2 940,994 + -1.0 940,995 - -0.3 941,009 + -0.2 941,009 + +0.7 941,010 - -0.4 941,010 - +0.6 941,010 - -0.2 941,010 - -0.3 941,010 - -0.0 941,015 + +1.0 941,082 - +0.0 941,087 + -1.4 941,087 + -1.3 941,087 + +0.8 941,088 - +0.1 941,126 + -0.2 941,126 + +1.2 941,127 - -1.0 941,127 - +0.8 941,127 - -1.7 941,210 + -0.0 941,211 - -0.0 941,268 + ABZR87_RS04515 0.12 -0.1 941,269 - ABZR87_RS04515 0.12 +0.2 941,874 + ABZR87_RS04515 0.39 +0.8 941,874 + ABZR87_RS04515 0.39 -1.1 941,924 + ABZR87_RS04515 0.41 -0.0 942,294 + ABZR87_RS04515 0.58 -0.5 942,294 + ABZR87_RS04515 0.58 -1.4 942,294 + ABZR87_RS04515 0.58 +0.6 942,294 + ABZR87_RS04515 0.58 -1.5 942,294 + ABZR87_RS04515 0.58 +0.6 942,295 - ABZR87_RS04515 0.58 -0.6 942,295 - ABZR87_RS04515 0.58 -0.8 942,295 - ABZR87_RS04515 0.58 -0.6 942,295 - ABZR87_RS04515 0.58 +0.4 942,295 - ABZR87_RS04515 0.58 +0.8 942,342 + ABZR87_RS04515 0.60 -0.3 942,342 + ABZR87_RS04515 0.60 -0.9 942,342 + ABZR87_RS04515 0.60 -0.5 942,343 - ABZR87_RS04515 0.60 -1.3 942,343 - ABZR87_RS04515 0.60 +0.2 942,945 + ABZR87_RS04515 0.87 -0.6 942,945 + ABZR87_RS04515 0.87 -1.5 942,945 + ABZR87_RS04515 0.87 -0.5 942,981 + ABZR87_RS04515 0.89 -0.1 942,981 + ABZR87_RS04515 0.89 +0.7 943,107 + +0.4 943,155 + -0.0 943,156 - -0.3 943,156 - -1.7 943,156 - +0.5 943,233 + -0.4 943,233 + +0.6 943,333 + ABZR87_RS04520 0.13 +0.0 943,333 + ABZR87_RS04520 0.13 +1.1 943,333 + ABZR87_RS04520 0.13 -0.1 943,368 + ABZR87_RS04520 0.19 +0.1 943,494 + ABZR87_RS04520 0.39 -0.2 943,494 + ABZR87_RS04520 0.39 -1.8 943,494 + ABZR87_RS04520 0.39 -0.5 943,495 - ABZR87_RS04520 0.39 -0.1 943,533 + ABZR87_RS04520 0.45 -0.2 943,533 + ABZR87_RS04520 0.45 -0.0 943,533 + ABZR87_RS04520 0.45 +2.2 943,534 - ABZR87_RS04520 0.45 +0.2 943,534 - ABZR87_RS04520 0.45 +0.0 943,571 + ABZR87_RS04520 0.51 +0.2 943,700 + ABZR87_RS04520 0.72 -0.6 943,700 + ABZR87_RS04520 0.72 -0.1 943,701 - ABZR87_RS04520 0.72 -0.4 943,701 - ABZR87_RS04520 0.72 -0.7 943,720 - ABZR87_RS04520 0.75 -1.4 943,720 - ABZR87_RS04520 0.75 -1.0 943,826 + -0.5 943,826 + -0.3 943,826 + +1.0 943,827 - +0.6 943,979 + +0.8 944,222 + -2.0 944,222 + +0.3 944,223 - +0.9
Or see this region's nucleotide sequence