Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03710 and ABZR87_RS03715 are separated by 91 nucleotides ABZR87_RS03715 and ABZR87_RS03720 are separated by 46 nucleotides ABZR87_RS03720 and ABZR87_RS03725 are separated by 700 nucleotides
ABZR87_RS03710: ABZR87_RS03710 - Hsp70 family protein, at 771,364 to 772,617
_RS03710
ABZR87_RS03715: ABZR87_RS03715 - NADPH-dependent FMN reductase, at 772,709 to 773,275
_RS03715
ABZR87_RS03720: ABZR87_RS03720 - hypothetical protein, at 773,322 to 773,690
_RS03720
ABZR87_RS03725: ABZR87_RS03725 - hypothetical protein, at 774,391 to 774,864
_RS03725
Position (kb) 773
774 Strain fitness (log2 ratio) -2
-1
0
1
2 at 772.468 kb on - strand, within ABZR87_RS03710 at 772.695 kb on + strand at 772.764 kb on + strand at 772.765 kb on - strand at 772.765 kb on - strand at 772.793 kb on - strand, within ABZR87_RS03715 at 772.806 kb on + strand, within ABZR87_RS03715 at 772.807 kb on - strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.813 kb on - strand, within ABZR87_RS03715 at 772.813 kb on - strand, within ABZR87_RS03715 at 772.813 kb on - strand, within ABZR87_RS03715 at 772.924 kb on + strand, within ABZR87_RS03715 at 772.924 kb on + strand, within ABZR87_RS03715 at 772.924 kb on + strand, within ABZR87_RS03715 at 772.924 kb on + strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.941 kb on - strand, within ABZR87_RS03715 at 772.941 kb on - strand, within ABZR87_RS03715 at 773.323 kb on + strand at 773.323 kb on + strand at 773.324 kb on - strand at 773.324 kb on - strand at 773.324 kb on - strand at 773.324 kb on - strand at 773.333 kb on - strand at 773.333 kb on - strand at 773.346 kb on + strand at 773.347 kb on - strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.356 kb on - strand at 773.356 kb on - strand at 773.356 kb on - strand at 773.356 kb on - strand at 773.356 kb on - strand at 773.358 kb on + strand at 773.358 kb on + strand at 773.358 kb on + strand at 773.358 kb on + strand at 773.358 kb on + strand at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.406 kb on + strand, within ABZR87_RS03720 at 773.406 kb on + strand, within ABZR87_RS03720 at 773.406 kb on + strand, within ABZR87_RS03720 at 773.406 kb on + strand, within ABZR87_RS03720 at 773.407 kb on - strand, within ABZR87_RS03720 at 773.410 kb on + strand, within ABZR87_RS03720 at 773.410 kb on + strand, within ABZR87_RS03720 at 773.411 kb on - strand, within ABZR87_RS03720 at 773.411 kb on - strand, within ABZR87_RS03720 at 773.411 kb on - strand, within ABZR87_RS03720 at 773.411 kb on - strand, within ABZR87_RS03720 at 773.429 kb on + strand, within ABZR87_RS03720 at 773.429 kb on + strand, within ABZR87_RS03720 at 773.441 kb on + strand, within ABZR87_RS03720 at 773.441 kb on + strand, within ABZR87_RS03720 at 773.441 kb on + strand, within ABZR87_RS03720 at 773.578 kb on + strand, within ABZR87_RS03720 at 773.582 kb on + strand, within ABZR87_RS03720 at 773.582 kb on + strand, within ABZR87_RS03720 at 773.653 kb on + strand, within ABZR87_RS03720 at 773.653 kb on + strand, within ABZR87_RS03720 at 773.654 kb on - strand at 773.690 kb on + strand at 773.690 kb on + strand at 773.690 kb on + strand at 773.691 kb on - strand at 773.691 kb on - strand at 773.691 kb on - strand at 773.820 kb on + strand at 773.820 kb on + strand at 773.927 kb on + strand at 773.927 kb on + strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.930 kb on - strand at 773.930 kb on - strand at 773.930 kb on - strand at 773.930 kb on - strand at 773.930 kb on - strand at 773.930 kb on - strand at 773.985 kb on + strand at 773.985 kb on + strand at 773.986 kb on - strand at 773.986 kb on - strand at 773.986 kb on - strand at 773.986 kb on - strand at 773.986 kb on - strand at 774.188 kb on - strand at 774.188 kb on - strand at 774.302 kb on + strand at 774.302 kb on + strand at 774.302 kb on + strand at 774.303 kb on - strand at 774.303 kb on - strand at 774.303 kb on - strand at 774.315 kb on + strand at 774.370 kb on - strand at 774.378 kb on + strand at 774.378 kb on + strand at 774.378 kb on + strand at 774.378 kb on + strand at 774.378 kb on + strand at 774.379 kb on - strand at 774.379 kb on - strand at 774.379 kb on - strand at 774.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 772,468 - ABZR87_RS03710 0.88 +0.1 772,695 + -0.3 772,764 + +0.1 772,765 - -0.6 772,765 - -0.6 772,793 - ABZR87_RS03715 0.15 +2.5 772,806 + ABZR87_RS03715 0.17 -0.1 772,807 - ABZR87_RS03715 0.17 -0.6 772,812 + ABZR87_RS03715 0.18 -0.0 772,812 + ABZR87_RS03715 0.18 +0.1 772,812 + ABZR87_RS03715 0.18 -0.8 772,812 + ABZR87_RS03715 0.18 +1.1 772,812 + ABZR87_RS03715 0.18 +0.4 772,812 + ABZR87_RS03715 0.18 +0.2 772,812 + ABZR87_RS03715 0.18 -0.8 772,813 - ABZR87_RS03715 0.18 -1.4 772,813 - ABZR87_RS03715 0.18 -0.5 772,813 - ABZR87_RS03715 0.18 -0.2 772,924 + ABZR87_RS03715 0.38 -0.2 772,924 + ABZR87_RS03715 0.38 -0.6 772,924 + ABZR87_RS03715 0.38 -0.2 772,924 + ABZR87_RS03715 0.38 +0.8 772,925 - ABZR87_RS03715 0.38 +0.6 772,925 - ABZR87_RS03715 0.38 -0.4 772,925 - ABZR87_RS03715 0.38 +0.0 772,925 - ABZR87_RS03715 0.38 -0.2 772,925 - ABZR87_RS03715 0.38 -0.2 772,925 - ABZR87_RS03715 0.38 -0.4 772,941 - ABZR87_RS03715 0.41 -0.2 772,941 - ABZR87_RS03715 0.41 +0.0 773,323 + +0.1 773,323 + -0.5 773,324 - -0.2 773,324 - -0.1 773,324 - -0.5 773,324 - +0.3 773,333 - -0.5 773,333 - +0.5 773,346 + +0.6 773,347 - -1.1 773,355 + +0.1 773,355 + -0.1 773,355 + +0.1 773,355 + -1.2 773,355 + -1.1 773,355 + +0.2 773,355 + -0.5 773,356 - +1.2 773,356 - -0.6 773,356 - +0.8 773,356 - -0.2 773,356 - -0.5 773,358 + -0.0 773,358 + +0.5 773,358 + -1.1 773,358 + -0.4 773,358 + -0.4 773,359 - ABZR87_RS03720 0.10 -0.8 773,359 - ABZR87_RS03720 0.10 -0.7 773,359 - ABZR87_RS03720 0.10 +0.7 773,359 - ABZR87_RS03720 0.10 -0.4 773,359 - ABZR87_RS03720 0.10 -0.5 773,359 - ABZR87_RS03720 0.10 +0.2 773,359 - ABZR87_RS03720 0.10 -0.9 773,359 - ABZR87_RS03720 0.10 +0.5 773,359 - ABZR87_RS03720 0.10 -0.8 773,406 + ABZR87_RS03720 0.23 +0.1 773,406 + ABZR87_RS03720 0.23 +1.0 773,406 + ABZR87_RS03720 0.23 -0.5 773,406 + ABZR87_RS03720 0.23 +0.3 773,407 - ABZR87_RS03720 0.23 -0.9 773,410 + ABZR87_RS03720 0.24 +0.7 773,410 + ABZR87_RS03720 0.24 +1.0 773,411 - ABZR87_RS03720 0.24 -1.0 773,411 - ABZR87_RS03720 0.24 -0.1 773,411 - ABZR87_RS03720 0.24 -0.6 773,411 - ABZR87_RS03720 0.24 +1.5 773,429 + ABZR87_RS03720 0.29 +0.0 773,429 + ABZR87_RS03720 0.29 +0.3 773,441 + ABZR87_RS03720 0.32 -0.7 773,441 + ABZR87_RS03720 0.32 -0.3 773,441 + ABZR87_RS03720 0.32 +0.4 773,578 + ABZR87_RS03720 0.69 -0.4 773,582 + ABZR87_RS03720 0.70 +0.0 773,582 + ABZR87_RS03720 0.70 -0.6 773,653 + ABZR87_RS03720 0.90 +0.8 773,653 + ABZR87_RS03720 0.90 +0.6 773,654 - +0.9 773,690 + -0.6 773,690 + -0.5 773,690 + +0.5 773,691 - -0.6 773,691 - +0.3 773,691 - -0.5 773,820 + -0.3 773,820 + -2.3 773,927 + +0.6 773,927 + -1.1 773,928 - -0.6 773,928 - +0.5 773,928 - +0.1 773,929 + +0.7 773,929 + +0.1 773,929 + +0.9 773,929 + -0.6 773,929 + +0.4 773,929 + -1.7 773,929 + +0.0 773,929 + -0.0 773,929 + -0.4 773,929 + -0.1 773,930 - -0.4 773,930 - -1.9 773,930 - -0.2 773,930 - +0.7 773,930 - -1.6 773,930 - +0.9 773,985 + -1.7 773,985 + +0.1 773,986 - +0.2 773,986 - +0.7 773,986 - -0.0 773,986 - -1.2 773,986 - -0.9 774,188 - -0.4 774,188 - -0.7 774,302 + +1.5 774,302 + -0.9 774,302 + +1.6 774,303 - -0.1 774,303 - -0.7 774,303 - +1.1 774,315 + -0.1 774,370 - +1.1 774,378 + -1.6 774,378 + -0.7 774,378 + +0.1 774,378 + -0.1 774,378 + +0.3 774,379 - -0.0 774,379 - -0.0 774,379 - +2.4 774,379 - -0.1
Or see this region's nucleotide sequence