Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03175 and ABZR87_RS03180 are separated by 335 nucleotides ABZR87_RS03180 and ABZR87_RS03185 are separated by 42 nucleotides ABZR87_RS03185 and ABZR87_RS03190 are separated by 272 nucleotides
ABZR87_RS03175: ABZR87_RS03175 - hypothetical protein, at 667,837 to 668,259
_RS03175
ABZR87_RS03180: ABZR87_RS03180 - hypothetical protein, at 668,595 to 668,822
_RS03180
ABZR87_RS03185: ABZR87_RS03185 - hypothetical protein, at 668,865 to 669,074
_RS03185
ABZR87_RS03190: ABZR87_RS03190 - hypothetical protein, at 669,347 to 670,561
_RS03190
Position (kb) 668
669
670 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 668.033 kb on + strand, within ABZR87_RS03175 at 668.033 kb on + strand, within ABZR87_RS03175 at 668.033 kb on + strand, within ABZR87_RS03175 at 668.034 kb on - strand, within ABZR87_RS03175 at 668.034 kb on - strand, within ABZR87_RS03175 at 668.066 kb on + strand, within ABZR87_RS03175 at 668.066 kb on + strand, within ABZR87_RS03175 at 668.066 kb on + strand, within ABZR87_RS03175 at 668.067 kb on - strand, within ABZR87_RS03175 at 668.067 kb on - strand, within ABZR87_RS03175 at 668.067 kb on - strand, within ABZR87_RS03175 at 668.099 kb on + strand, within ABZR87_RS03175 at 668.100 kb on - strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.157 kb on - strand, within ABZR87_RS03175 at 668.225 kb on + strand at 668.226 kb on - strand at 668.226 kb on - strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.416 kb on - strand at 668.416 kb on - strand at 668.426 kb on + strand at 668.426 kb on + strand at 668.480 kb on + strand at 668.480 kb on + strand at 668.481 kb on - strand at 668.518 kb on - strand at 668.583 kb on + strand at 668.596 kb on + strand at 668.596 kb on + strand at 668.596 kb on + strand at 668.596 kb on + strand at 668.597 kb on - strand at 668.597 kb on - strand at 668.597 kb on - strand at 668.674 kb on + strand, within ABZR87_RS03180 at 668.675 kb on - strand, within ABZR87_RS03180 at 668.675 kb on - strand, within ABZR87_RS03180 at 668.815 kb on + strand at 668.815 kb on + strand at 668.866 kb on + strand at 668.866 kb on + strand at 668.867 kb on - strand at 668.867 kb on - strand at 668.924 kb on - strand, within ABZR87_RS03185 at 669.020 kb on + strand, within ABZR87_RS03185 at 669.021 kb on - strand, within ABZR87_RS03185 at 669.021 kb on - strand, within ABZR87_RS03185 at 669.024 kb on + strand, within ABZR87_RS03185 at 669.025 kb on - strand, within ABZR87_RS03185 at 669.025 kb on - strand, within ABZR87_RS03185 at 669.025 kb on - strand, within ABZR87_RS03185 at 669.025 kb on - strand, within ABZR87_RS03185 at 669.025 kb on - strand, within ABZR87_RS03185 at 669.338 kb on + strand at 669.338 kb on + strand at 669.338 kb on + strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.339 kb on - strand at 669.342 kb on + strand at 669.342 kb on + strand at 669.342 kb on + strand at 669.343 kb on - strand at 669.343 kb on - strand at 669.343 kb on - strand at 669.391 kb on + strand at 669.464 kb on + strand at 669.464 kb on + strand at 669.464 kb on + strand at 669.465 kb on - strand at 669.465 kb on - strand at 669.584 kb on + strand, within ABZR87_RS03190 at 669.584 kb on + strand, within ABZR87_RS03190 at 669.584 kb on + strand, within ABZR87_RS03190 at 669.584 kb on + strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.585 kb on - strand, within ABZR87_RS03190 at 669.758 kb on + strand, within ABZR87_RS03190 at 669.758 kb on + strand, within ABZR87_RS03190 at 669.758 kb on + strand, within ABZR87_RS03190 at 669.758 kb on + strand, within ABZR87_RS03190 at 669.759 kb on - strand, within ABZR87_RS03190 at 669.759 kb on - strand, within ABZR87_RS03190 at 669.759 kb on - strand, within ABZR87_RS03190 at 669.826 kb on + strand, within ABZR87_RS03190 at 669.827 kb on - strand, within ABZR87_RS03190 at 669.827 kb on - strand, within ABZR87_RS03190 at 669.827 kb on - strand, within ABZR87_RS03190 at 669.827 kb on - strand, within ABZR87_RS03190 at 669.861 kb on - strand, within ABZR87_RS03190 at 669.861 kb on - strand, within ABZR87_RS03190 at 669.861 kb on - strand, within ABZR87_RS03190 at 669.861 kb on - strand, within ABZR87_RS03190 at 669.921 kb on - strand, within ABZR87_RS03190 at 669.932 kb on + strand, within ABZR87_RS03190 at 669.933 kb on - strand, within ABZR87_RS03190 at 669.933 kb on - strand, within ABZR87_RS03190
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 668,033 + ABZR87_RS03175 0.46 -0.2 668,033 + ABZR87_RS03175 0.46 -0.1 668,033 + ABZR87_RS03175 0.46 -1.8 668,034 - ABZR87_RS03175 0.47 -1.3 668,034 - ABZR87_RS03175 0.47 -0.3 668,066 + ABZR87_RS03175 0.54 -0.3 668,066 + ABZR87_RS03175 0.54 +0.4 668,066 + ABZR87_RS03175 0.54 +0.5 668,067 - ABZR87_RS03175 0.54 -0.0 668,067 - ABZR87_RS03175 0.54 -0.3 668,067 - ABZR87_RS03175 0.54 -0.8 668,099 + ABZR87_RS03175 0.62 +2.8 668,100 - ABZR87_RS03175 0.62 +1.4 668,156 + ABZR87_RS03175 0.75 -0.5 668,156 + ABZR87_RS03175 0.75 +0.2 668,156 + ABZR87_RS03175 0.75 +0.4 668,156 + ABZR87_RS03175 0.75 -0.9 668,157 - ABZR87_RS03175 0.76 -1.2 668,225 + -0.0 668,226 - -0.3 668,226 - +0.7 668,246 + -0.1 668,246 + +1.7 668,246 + +0.7 668,246 + -0.2 668,246 + +0.4 668,246 + -0.5 668,246 + -1.3 668,247 - -0.1 668,247 - +1.2 668,247 - -0.8 668,247 - +0.1 668,247 - +1.1 668,247 - -0.0 668,364 + -0.8 668,364 + -0.5 668,364 + +0.1 668,364 + -0.4 668,364 + -0.0 668,365 - -0.3 668,365 - +0.1 668,365 - -0.2 668,365 - -0.6 668,365 - +0.8 668,365 - -1.1 668,365 - +0.6 668,365 - +0.3 668,365 - +1.0 668,415 + +0.4 668,415 + -0.1 668,415 + +0.2 668,415 + +0.7 668,415 + +0.7 668,415 + +0.7 668,416 - +0.1 668,416 - -0.4 668,426 + +0.7 668,426 + +1.4 668,480 + -0.8 668,480 + +0.8 668,481 - +0.5 668,518 - -1.0 668,583 + +0.3 668,596 + -1.5 668,596 + -0.3 668,596 + +0.4 668,596 + -0.0 668,597 - -0.0 668,597 - -1.7 668,597 - -0.1 668,674 + ABZR87_RS03180 0.35 -0.9 668,675 - ABZR87_RS03180 0.35 -0.8 668,675 - ABZR87_RS03180 0.35 -1.8 668,815 + +0.9 668,815 + +0.5 668,866 + -0.2 668,866 + -0.7 668,867 - -0.7 668,867 - +0.1 668,924 - ABZR87_RS03185 0.28 +0.2 669,020 + ABZR87_RS03185 0.74 -0.8 669,021 - ABZR87_RS03185 0.74 -0.1 669,021 - ABZR87_RS03185 0.74 -0.1 669,024 + ABZR87_RS03185 0.76 +0.6 669,025 - ABZR87_RS03185 0.76 +0.2 669,025 - ABZR87_RS03185 0.76 -0.1 669,025 - ABZR87_RS03185 0.76 -0.1 669,025 - ABZR87_RS03185 0.76 -0.1 669,025 - ABZR87_RS03185 0.76 +0.1 669,338 + -1.0 669,338 + -0.3 669,338 + +0.0 669,339 - -0.6 669,339 - +1.2 669,339 - -1.6 669,339 - +0.2 669,339 - -0.5 669,339 - -0.5 669,339 - +0.5 669,339 - -0.4 669,342 + -0.5 669,342 + -0.4 669,342 + -0.8 669,343 - +0.1 669,343 - -0.4 669,343 - +0.9 669,391 + +2.3 669,464 + +0.5 669,464 + -0.2 669,464 + +0.2 669,465 - +0.2 669,465 - -0.6 669,584 + ABZR87_RS03190 0.20 +1.1 669,584 + ABZR87_RS03190 0.20 +0.3 669,584 + ABZR87_RS03190 0.20 -1.6 669,584 + ABZR87_RS03190 0.20 +0.3 669,585 - ABZR87_RS03190 0.20 -0.5 669,585 - ABZR87_RS03190 0.20 +0.0 669,585 - ABZR87_RS03190 0.20 +0.9 669,585 - ABZR87_RS03190 0.20 -0.3 669,585 - ABZR87_RS03190 0.20 -0.1 669,585 - ABZR87_RS03190 0.20 +0.1 669,585 - ABZR87_RS03190 0.20 +1.0 669,585 - ABZR87_RS03190 0.20 -0.4 669,585 - ABZR87_RS03190 0.20 +0.9 669,758 + ABZR87_RS03190 0.34 -0.5 669,758 + ABZR87_RS03190 0.34 -0.5 669,758 + ABZR87_RS03190 0.34 +0.2 669,758 + ABZR87_RS03190 0.34 +0.1 669,759 - ABZR87_RS03190 0.34 -1.3 669,759 - ABZR87_RS03190 0.34 -0.1 669,759 - ABZR87_RS03190 0.34 +0.5 669,826 + ABZR87_RS03190 0.39 -0.1 669,827 - ABZR87_RS03190 0.40 -0.1 669,827 - ABZR87_RS03190 0.40 -0.2 669,827 - ABZR87_RS03190 0.40 -0.7 669,827 - ABZR87_RS03190 0.40 -0.3 669,861 - ABZR87_RS03190 0.42 -0.3 669,861 - ABZR87_RS03190 0.42 +0.3 669,861 - ABZR87_RS03190 0.42 -1.2 669,861 - ABZR87_RS03190 0.42 -0.8 669,921 - ABZR87_RS03190 0.47 -0.1 669,932 + ABZR87_RS03190 0.48 -0.0 669,933 - ABZR87_RS03190 0.48 -0.3 669,933 - ABZR87_RS03190 0.48 -0.0
Or see this region's nucleotide sequence