Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01025

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01015 and ABZR87_RS01020 overlap by 8 nucleotidesABZR87_RS01020 and ABZR87_RS01025 are separated by 2 nucleotidesABZR87_RS01025 and ABZR87_RS01030 are separated by 25 nucleotides ABZR87_RS01015: ABZR87_RS01015 - imidazolonepropionase, at 201,609 to 202,844 _RS01015 ABZR87_RS01020: ABZR87_RS01020 - formimidoylglutamase, at 202,837 to 203,814 _RS01020 ABZR87_RS01025: ABZR87_RS01025 - histidine ammonia-lyase, at 203,817 to 205,373 _RS01025 ABZR87_RS01030: ABZR87_RS01030 - urocanate hydratase, at 205,399 to 207,117 _RS01030 Position (kb) 203 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 203.090 kb on + strand, within ABZR87_RS01020at 203.091 kb on - strand, within ABZR87_RS01020at 203.228 kb on + strand, within ABZR87_RS01020at 203.228 kb on + strand, within ABZR87_RS01020at 203.228 kb on + strand, within ABZR87_RS01020at 203.229 kb on - strand, within ABZR87_RS01020at 203.229 kb on - strand, within ABZR87_RS01020at 203.229 kb on - strand, within ABZR87_RS01020at 203.252 kb on + strand, within ABZR87_RS01020at 203.252 kb on + strand, within ABZR87_RS01020at 203.253 kb on - strand, within ABZR87_RS01020at 203.341 kb on + strand, within ABZR87_RS01020at 203.370 kb on + strand, within ABZR87_RS01020at 203.929 kb on + strandat 203.929 kb on + strandat 203.929 kb on + strandat 203.929 kb on + strandat 203.930 kb on - strandat 203.930 kb on - strandat 203.932 kb on + strandat 203.932 kb on + strandat 203.932 kb on + strandat 204.385 kb on - strand, within ABZR87_RS01025at 204.403 kb on + strand, within ABZR87_RS01025at 204.403 kb on + strand, within ABZR87_RS01025at 204.404 kb on - strand, within ABZR87_RS01025at 204.512 kb on + strand, within ABZR87_RS01025at 204.512 kb on + strand, within ABZR87_RS01025at 204.513 kb on - strand, within ABZR87_RS01025at 204.513 kb on - strand, within ABZR87_RS01025at 204.514 kb on + strand, within ABZR87_RS01025at 204.514 kb on + strand, within ABZR87_RS01025at 204.514 kb on + strand, within ABZR87_RS01025at 204.515 kb on - strand, within ABZR87_RS01025at 204.515 kb on - strand, within ABZR87_RS01025at 204.586 kb on + strand, within ABZR87_RS01025at 205.373 kb on + strandat 205.373 kb on + strandat 205.373 kb on + strandat 205.373 kb on + strandat 205.373 kb on + strandat 205.374 kb on - strandat 205.374 kb on - strandat 205.374 kb on - strandat 205.374 kb on - strandat 205.395 kb on + strandat 205.396 kb on - strandat 205.396 kb on - strandat 205.396 kb on - strandat 205.396 kb on - strandat 205.396 kb on - strandat 205.400 kb on + strandat 205.401 kb on - strandat 205.401 kb on - strandat 205.577 kb on + strand, within ABZR87_RS01030at 205.578 kb on - strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.950 kb on - strand, within ABZR87_RS01030at 205.950 kb on - strand, within ABZR87_RS01030at 205.950 kb on - strand, within ABZR87_RS01030at 205.950 kb on - strand, within ABZR87_RS01030at 205.950 kb on - strand, within ABZR87_RS01030at 206.024 kb on + strand, within ABZR87_RS01030at 206.024 kb on + strand, within ABZR87_RS01030at 206.024 kb on + strand, within ABZR87_RS01030at 206.024 kb on + strand, within ABZR87_RS01030at 206.025 kb on - strand, within ABZR87_RS01030at 206.025 kb on - strand, within ABZR87_RS01030at 206.102 kb on + strand, within ABZR87_RS01030at 206.103 kb on - strand, within ABZR87_RS01030at 206.256 kb on - strand, within ABZR87_RS01030

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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203,090 + ABZR87_RS01020 0.26 -0.6
203,091 - ABZR87_RS01020 0.26 -0.2
203,228 + ABZR87_RS01020 0.40 +0.0
203,228 + ABZR87_RS01020 0.40 -1.3
203,228 + ABZR87_RS01020 0.40 +0.7
203,229 - ABZR87_RS01020 0.40 -1.3
203,229 - ABZR87_RS01020 0.40 -0.6
203,229 - ABZR87_RS01020 0.40 -0.4
203,252 + ABZR87_RS01020 0.42 +1.5
203,252 + ABZR87_RS01020 0.42 -0.2
203,253 - ABZR87_RS01020 0.43 +0.2
203,341 + ABZR87_RS01020 0.52 -1.0
203,370 + ABZR87_RS01020 0.54 +0.6
203,929 + +1.3
203,929 + -1.7
203,929 + -0.9
203,929 + -0.3
203,930 - -0.4
203,930 - +0.4
203,932 + +0.2
203,932 + +0.6
203,932 + +0.8
204,385 - ABZR87_RS01025 0.36 +1.0
204,403 + ABZR87_RS01025 0.38 -0.3
204,403 + ABZR87_RS01025 0.38 +0.3
204,404 - ABZR87_RS01025 0.38 -0.0
204,512 + ABZR87_RS01025 0.45 +0.4
204,512 + ABZR87_RS01025 0.45 +0.3
204,513 - ABZR87_RS01025 0.45 +0.7
204,513 - ABZR87_RS01025 0.45 -0.1
204,514 + ABZR87_RS01025 0.45 -0.3
204,514 + ABZR87_RS01025 0.45 +0.0
204,514 + ABZR87_RS01025 0.45 -0.3
204,515 - ABZR87_RS01025 0.45 -0.7
204,515 - ABZR87_RS01025 0.45 -0.2
204,586 + ABZR87_RS01025 0.49 -0.5
205,373 + -0.9
205,373 + -0.3
205,373 + -0.7
205,373 + -0.5
205,373 + +0.2
205,374 - -0.3
205,374 - +0.1
205,374 - +0.1
205,374 - +0.7
205,395 + -0.1
205,396 - -1.9
205,396 - -3.0
205,396 - -0.1
205,396 - +0.1
205,396 - +0.4
205,400 + -0.2
205,401 - -0.4
205,401 - -2.4
205,577 + ABZR87_RS01030 0.10 +0.6
205,578 - ABZR87_RS01030 0.10 -1.0
205,949 + ABZR87_RS01030 0.32 +0.3
205,949 + ABZR87_RS01030 0.32 -0.4
205,949 + ABZR87_RS01030 0.32 -1.6
205,949 + ABZR87_RS01030 0.32 +0.7
205,949 + ABZR87_RS01030 0.32 -0.4
205,949 + ABZR87_RS01030 0.32 +0.3
205,949 + ABZR87_RS01030 0.32 +0.4
205,949 + ABZR87_RS01030 0.32 +0.9
205,949 + ABZR87_RS01030 0.32 +0.1
205,949 + ABZR87_RS01030 0.32 -1.4
205,950 - ABZR87_RS01030 0.32 +1.9
205,950 - ABZR87_RS01030 0.32 -0.7
205,950 - ABZR87_RS01030 0.32 -0.3
205,950 - ABZR87_RS01030 0.32 +0.8
205,950 - ABZR87_RS01030 0.32 -0.2
206,024 + ABZR87_RS01030 0.36 -0.7
206,024 + ABZR87_RS01030 0.36 +0.8
206,024 + ABZR87_RS01030 0.36 -1.0
206,024 + ABZR87_RS01030 0.36 -1.8
206,025 - ABZR87_RS01030 0.36 -0.4
206,025 - ABZR87_RS01030 0.36 +0.7
206,102 + ABZR87_RS01030 0.41 +1.3
206,103 - ABZR87_RS01030 0.41 -1.7
206,256 - ABZR87_RS01030 0.50 +0.1

Or see this region's nucleotide sequence