Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00560

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
113,956	+				-0.5
113,956	+				+0.6
113,956	+				-2.0
113,957	-				-0.7
113,957	-				-0.4
113,957	-				+0.1
113,957	-				+1.7
113,957	-				+0.1
113,957	-				+0.3
113,957	-				+0.8
114,078	+				-1.0
114,078	+				-0.7
114,078	+				-0.2
114,078	+				-0.0
114,078	+				+0.3
114,079	-				+0.0
114,079	-				-0.3
114,205	+		ABZR87_RS00555	0.22	-0.3
114,205	+		ABZR87_RS00555	0.22	+1.0
114,206	-		ABZR87_RS00555	0.22	+0.7
114,289	+		ABZR87_RS00555	0.34	+0.5
114,290	-		ABZR87_RS00555	0.34	+0.1
114,316	-		ABZR87_RS00555	0.37	-0.7
114,316	-		ABZR87_RS00555	0.37	+0.7
114,316	-		ABZR87_RS00555	0.37	+0.3
114,324	+		ABZR87_RS00555	0.38	+0.1
114,324	+		ABZR87_RS00555	0.38	-0.4
114,324	+		ABZR87_RS00555	0.38	-0.6
114,324	+		ABZR87_RS00555	0.38	-0.0
114,324	+		ABZR87_RS00555	0.38	+0.4
114,324	+		ABZR87_RS00555	0.38	+1.6
114,325	-		ABZR87_RS00555	0.38	+0.7
114,325	-		ABZR87_RS00555	0.38	+0.8
114,325	-		ABZR87_RS00555	0.38	+0.6
114,325	-		ABZR87_RS00555	0.38	-1.0
114,325	-		ABZR87_RS00555	0.38	-0.1
114,325	-		ABZR87_RS00555	0.38	+0.3
114,325	-		ABZR87_RS00555	0.38	+0.2
114,325	-		ABZR87_RS00555	0.38	+0.1
114,325	-		ABZR87_RS00555	0.38	-0.4
114,602	+		ABZR87_RS00555	0.76	-0.2
114,602	+		ABZR87_RS00555	0.76	-0.8
114,602	+		ABZR87_RS00555	0.76	+0.4
114,603	-		ABZR87_RS00555	0.76	-0.7
114,603	-		ABZR87_RS00555	0.76	-1.9
114,603	-		ABZR87_RS00555	0.76	-0.4
114,603	-		ABZR87_RS00555	0.76	+0.3
114,603	-		ABZR87_RS00555	0.76	+1.5
114,603	-		ABZR87_RS00555	0.76	+0.6
114,746	-				+0.1
114,828	+				-1.0
114,891	+				-1.8
114,892	-				-1.4
114,892	-				-0.5
114,896	+				+0.7
114,897	-				-0.6
114,897	-				+1.1
114,897	-				+0.0
114,897	-				+0.6
114,897	-				+0.4
114,947	+				+0.5
114,947	+				-0.2
114,947	+				+0.5
114,948	-				-0.0
115,017	+				-0.1
115,017	+				+1.9
115,017	+				-0.1
115,018	-				+0.7
115,018	-				+0.2
115,018	-				+0.5
115,018	-				-0.4
115,018	-				-0.1
115,019	+				-0.9
115,019	+				-0.9
115,019	+				-0.3
115,020	-				+0.6
115,020	-				-0.3
115,020	-				-0.4
115,316	+		ABZR87_RS00560	0.27	+1.5
115,435	+		ABZR87_RS00560	0.35	-0.9
115,611	-		ABZR87_RS00560	0.47	-0.1
115,611	-		ABZR87_RS00560	0.47	-0.3
115,611	-		ABZR87_RS00560	0.47	-1.2
115,635	-		ABZR87_RS00560	0.48	+1.2
115,943	+		ABZR87_RS00560	0.69	-0.6
115,943	+		ABZR87_RS00560	0.69	-0.2
115,944	-		ABZR87_RS00560	0.69	-0.6
115,944	-		ABZR87_RS00560	0.69	+0.1
116,192	+		ABZR87_RS00560	0.86	-0.2
116,192	+		ABZR87_RS00560	0.86	+0.5
116,192	+		ABZR87_RS00560	0.86	-0.8
116,192	+		ABZR87_RS00560	0.86	+0.3
116,192	+		ABZR87_RS00560	0.86	-0.3
116,192	+		ABZR87_RS00560	0.86	+0.1
116,193	-		ABZR87_RS00560	0.86	+0.4
116,193	-		ABZR87_RS00560	0.86	-1.4
116,193	-		ABZR87_RS00560	0.86	+1.1
116,193	-		ABZR87_RS00560	0.86	+0.1
116,193	-		ABZR87_RS00560	0.86	+0.9
116,243	+		ABZR87_RS00560	0.89	+0.1
116,243	+		ABZR87_RS00560	0.89	+0.1
116,243	+		ABZR87_RS00560	0.89	+0.3
116,244	-		ABZR87_RS00560	0.89	-1.2
116,340	-				+0.7
116,340	-				-0.2
116,415	+				+0.5
116,416	-				+0.3
116,416	-				-0.2
116,586	+		ABZR87_RS00565	0.32	-0.6
116,587	-		ABZR87_RS00565	0.32	+0.4
116,587	-		ABZR87_RS00565	0.32	-0.5
116,587	-		ABZR87_RS00565	0.32	-0.5
116,700	+		ABZR87_RS00565	0.52	+0.6
116,700	+		ABZR87_RS00565	0.52	-0.1
116,700	+		ABZR87_RS00565	0.52	+0.4
116,700	+		ABZR87_RS00565	0.52	+0.2
116,700	+		ABZR87_RS00565	0.52	-0.8
116,700	+		ABZR87_RS00565	0.52	+1.2
116,701	-		ABZR87_RS00565	0.53	+0.3
116,701	-		ABZR87_RS00565	0.53	-0.0
116,701	-		ABZR87_RS00565	0.53	+1.1
116,701	-		ABZR87_RS00565	0.53	-0.7
116,701	-		ABZR87_RS00565	0.53	-0.4
116,958	+				+0.3
116,958	+				-0.4
117,116	+		ABZR87_RS00570	0.10	-0.0
117,116	+		ABZR87_RS00570	0.10	-1.5
117,279	+		ABZR87_RS00570	0.28	+0.3
117,279	+		ABZR87_RS00570	0.28	+0.4
117,280	-		ABZR87_RS00570	0.28	-0.2
117,297	+		ABZR87_RS00570	0.30	-1.7
117,298	-		ABZR87_RS00570	0.30	+0.8
117,298	-		ABZR87_RS00570	0.30	-0.4
117,298	-		ABZR87_RS00570	0.30	+0.6
117,298	-		ABZR87_RS00570	0.30	+1.8
117,298	-		ABZR87_RS00570	0.30	-0.5
117,348	+		ABZR87_RS00570	0.35	+0.5
117,348	+		ABZR87_RS00570	0.35	-0.3
117,348	+		ABZR87_RS00570	0.35	-0.3
117,348	+		ABZR87_RS00570	0.35	+0.1
117,348	+		ABZR87_RS00570	0.35	+0.3
117,349	-		ABZR87_RS00570	0.35	-1.3
117,349	-		ABZR87_RS00570	0.35	-0.3
117,349	-		ABZR87_RS00570	0.35	+1.3
117,349	-		ABZR87_RS00570	0.35	+0.1
117,349	-		ABZR87_RS00570	0.35	+2.5
117,349	-		ABZR87_RS00570	0.35	-0.6