Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00545

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00535 and ABZR87_RS00540 are separated by 8 nucleotidesABZR87_RS00540 and ABZR87_RS00545 are separated by 16 nucleotidesABZR87_RS00545 and ABZR87_RS00550 are separated by 316 nucleotides ABZR87_RS00535: ABZR87_RS00535 - hypothetical protein, at 110,979 to 111,326 _RS00535 ABZR87_RS00540: ABZR87_RS00540 - 4-hydroxy-tetrahydrodipicolinate synthase, at 111,335 to 112,219 _RS00540 ABZR87_RS00545: ABZR87_RS00545 - hypothetical protein, at 112,236 to 112,829 _RS00545 ABZR87_RS00550: ABZR87_RS00550 - neutral zinc metallopeptidase, at 113,146 to 114,030 _RS00550 Position (kb) 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 111.501 kb on - strand, within ABZR87_RS00540at 111.501 kb on - strand, within ABZR87_RS00540at 111.605 kb on + strand, within ABZR87_RS00540at 111.605 kb on + strand, within ABZR87_RS00540at 111.606 kb on - strand, within ABZR87_RS00540at 111.606 kb on - strand, within ABZR87_RS00540at 111.630 kb on - strand, within ABZR87_RS00540at 111.647 kb on + strand, within ABZR87_RS00540at 111.647 kb on + strand, within ABZR87_RS00540at 111.648 kb on - strand, within ABZR87_RS00540at 111.648 kb on - strand, within ABZR87_RS00540at 111.648 kb on - strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.650 kb on + strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.651 kb on - strand, within ABZR87_RS00540at 111.686 kb on + strand, within ABZR87_RS00540at 111.687 kb on - strand, within ABZR87_RS00540at 111.728 kb on + strand, within ABZR87_RS00540at 111.729 kb on - strand, within ABZR87_RS00540at 111.729 kb on - strand, within ABZR87_RS00540at 112.206 kb on + strandat 112.218 kb on - strandat 112.218 kb on - strandat 112.218 kb on - strandat 112.249 kb on + strandat 112.249 kb on + strandat 112.249 kb on + strandat 112.249 kb on + strandat 112.249 kb on + strandat 112.250 kb on - strandat 112.250 kb on - strandat 112.250 kb on - strandat 112.283 kb on + strandat 112.283 kb on + strandat 112.283 kb on + strandat 112.283 kb on + strandat 112.284 kb on - strandat 112.284 kb on - strandat 112.284 kb on - strandat 112.284 kb on - strandat 112.285 kb on + strandat 112.285 kb on + strandat 112.285 kb on + strandat 112.286 kb on - strandat 112.286 kb on - strandat 112.286 kb on - strandat 112.286 kb on - strandat 112.606 kb on + strand, within ABZR87_RS00545at 112.606 kb on + strand, within ABZR87_RS00545at 112.606 kb on + strand, within ABZR87_RS00545at 112.606 kb on + strand, within ABZR87_RS00545at 112.607 kb on - strand, within ABZR87_RS00545at 112.607 kb on - strand, within ABZR87_RS00545at 112.607 kb on - strand, within ABZR87_RS00545at 112.618 kb on + strand, within ABZR87_RS00545at 112.619 kb on - strand, within ABZR87_RS00545at 112.619 kb on - strand, within ABZR87_RS00545at 112.619 kb on - strand, within ABZR87_RS00545at 112.619 kb on - strand, within ABZR87_RS00545at 112.619 kb on - strand, within ABZR87_RS00545at 112.675 kb on - strand, within ABZR87_RS00545at 112.940 kb on + strandat 112.940 kb on + strandat 113.050 kb on + strandat 113.050 kb on + strandat 113.050 kb on + strandat 113.051 kb on - strandat 113.051 kb on - strandat 113.051 kb on - strandat 113.051 kb on - strandat 113.054 kb on + strandat 113.054 kb on + strandat 113.054 kb on + strandat 113.054 kb on + strandat 113.054 kb on + strandat 113.055 kb on - strandat 113.055 kb on - strandat 113.055 kb on - strandat 113.105 kb on + strandat 113.105 kb on + strandat 113.105 kb on + strandat 113.106 kb on - strandat 113.106 kb on - strandat 113.106 kb on - strandat 113.116 kb on - strandat 113.116 kb on - strandat 113.133 kb on + strandat 113.133 kb on + strandat 113.134 kb on - strandat 113.473 kb on + strand, within ABZR87_RS00550at 113.474 kb on - strand, within ABZR87_RS00550at 113.554 kb on + strand, within ABZR87_RS00550at 113.554 kb on + strand, within ABZR87_RS00550at 113.554 kb on + strand, within ABZR87_RS00550at 113.554 kb on + strand, within ABZR87_RS00550at 113.554 kb on + strand, within ABZR87_RS00550at 113.555 kb on - strand, within ABZR87_RS00550at 113.555 kb on - strand, within ABZR87_RS00550at 113.555 kb on - strand, within ABZR87_RS00550at 113.555 kb on - strand, within ABZR87_RS00550at 113.555 kb on - strand, within ABZR87_RS00550at 113.578 kb on + strand, within ABZR87_RS00550at 113.578 kb on + strand, within ABZR87_RS00550at 113.578 kb on + strand, within ABZR87_RS00550at 113.578 kb on + strand, within ABZR87_RS00550at 113.579 kb on - strand, within ABZR87_RS00550at 113.579 kb on - strand, within ABZR87_RS00550at 113.647 kb on + strand, within ABZR87_RS00550at 113.647 kb on + strand, within ABZR87_RS00550at 113.648 kb on - strand, within ABZR87_RS00550at 113.648 kb on - strand, within ABZR87_RS00550at 113.648 kb on - strand, within ABZR87_RS00550at 113.648 kb on - strand, within ABZR87_RS00550

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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111,501 - ABZR87_RS00540 0.19 +1.9
111,501 - ABZR87_RS00540 0.19 -0.7
111,605 + ABZR87_RS00540 0.31 +1.5
111,605 + ABZR87_RS00540 0.31 -0.2
111,606 - ABZR87_RS00540 0.31 -0.4
111,606 - ABZR87_RS00540 0.31 -0.1
111,630 - ABZR87_RS00540 0.33 +0.5
111,647 + ABZR87_RS00540 0.35 -0.2
111,647 + ABZR87_RS00540 0.35 +0.0
111,648 - ABZR87_RS00540 0.35 -0.6
111,648 - ABZR87_RS00540 0.35 -0.9
111,648 - ABZR87_RS00540 0.35 -1.1
111,650 + ABZR87_RS00540 0.36 -0.1
111,650 + ABZR87_RS00540 0.36 -1.4
111,650 + ABZR87_RS00540 0.36 -0.2
111,650 + ABZR87_RS00540 0.36 -1.7
111,650 + ABZR87_RS00540 0.36 +1.1
111,650 + ABZR87_RS00540 0.36 +0.4
111,650 + ABZR87_RS00540 0.36 -0.3
111,650 + ABZR87_RS00540 0.36 -0.6
111,650 + ABZR87_RS00540 0.36 -0.5
111,651 - ABZR87_RS00540 0.36 -2.5
111,651 - ABZR87_RS00540 0.36 -0.3
111,651 - ABZR87_RS00540 0.36 -0.3
111,651 - ABZR87_RS00540 0.36 -0.1
111,651 - ABZR87_RS00540 0.36 -0.8
111,651 - ABZR87_RS00540 0.36 -0.5
111,686 + ABZR87_RS00540 0.40 -0.3
111,687 - ABZR87_RS00540 0.40 +0.4
111,728 + ABZR87_RS00540 0.44 +1.2
111,729 - ABZR87_RS00540 0.45 -0.0
111,729 - ABZR87_RS00540 0.45 +0.5
112,206 + +0.0
112,218 - +1.0
112,218 - -0.3
112,218 - -0.4
112,249 + -0.9
112,249 + -0.6
112,249 + +0.1
112,249 + -0.0
112,249 + -1.2
112,250 - +1.5
112,250 - +1.2
112,250 - +0.7
112,283 + -0.9
112,283 + -0.0
112,283 + -0.2
112,283 + -0.6
112,284 - -0.1
112,284 - -0.9
112,284 - +0.3
112,284 - -0.4
112,285 + +0.1
112,285 + +0.3
112,285 + +0.3
112,286 - -0.0
112,286 - +0.7
112,286 - -0.6
112,286 - -1.7
112,606 + ABZR87_RS00545 0.62 +0.2
112,606 + ABZR87_RS00545 0.62 -0.1
112,606 + ABZR87_RS00545 0.62 +0.4
112,606 + ABZR87_RS00545 0.62 +0.2
112,607 - ABZR87_RS00545 0.62 -0.4
112,607 - ABZR87_RS00545 0.62 +1.4
112,607 - ABZR87_RS00545 0.62 +1.4
112,618 + ABZR87_RS00545 0.64 +1.1
112,619 - ABZR87_RS00545 0.64 +0.3
112,619 - ABZR87_RS00545 0.64 -0.2
112,619 - ABZR87_RS00545 0.64 +1.9
112,619 - ABZR87_RS00545 0.64 +1.3
112,619 - ABZR87_RS00545 0.64 -0.2
112,675 - ABZR87_RS00545 0.74 +1.1
112,940 + -0.6
112,940 + +0.7
113,050 + -2.9
113,050 + -0.0
113,050 + +1.2
113,051 - +1.2
113,051 - -0.5
113,051 - +0.6
113,051 - -0.5
113,054 + -0.7
113,054 + -1.2
113,054 + -0.3
113,054 + -0.2
113,054 + +0.8
113,055 - -0.1
113,055 - +1.2
113,055 - -0.9
113,105 + +0.5
113,105 + +0.4
113,105 + -0.6
113,106 - +1.1
113,106 - -0.5
113,106 - +0.3
113,116 - -0.6
113,116 - -0.3
113,133 + -0.0
113,133 + +0.7
113,134 - -0.1
113,473 + ABZR87_RS00550 0.37 +0.2
113,474 - ABZR87_RS00550 0.37 -0.4
113,554 + ABZR87_RS00550 0.46 +0.2
113,554 + ABZR87_RS00550 0.46 -0.5
113,554 + ABZR87_RS00550 0.46 -1.3
113,554 + ABZR87_RS00550 0.46 +0.0
113,554 + ABZR87_RS00550 0.46 -0.1
113,555 - ABZR87_RS00550 0.46 -2.4
113,555 - ABZR87_RS00550 0.46 -0.7
113,555 - ABZR87_RS00550 0.46 -1.1
113,555 - ABZR87_RS00550 0.46 -0.8
113,555 - ABZR87_RS00550 0.46 -0.2
113,578 + ABZR87_RS00550 0.49 +0.9
113,578 + ABZR87_RS00550 0.49 -0.0
113,578 + ABZR87_RS00550 0.49 +0.9
113,578 + ABZR87_RS00550 0.49 +0.2
113,579 - ABZR87_RS00550 0.49 -0.5
113,579 - ABZR87_RS00550 0.49 -0.5
113,647 + ABZR87_RS00550 0.57 -0.4
113,647 + ABZR87_RS00550 0.57 +0.5
113,648 - ABZR87_RS00550 0.57 -0.1
113,648 - ABZR87_RS00550 0.57 -0.7
113,648 - ABZR87_RS00550 0.57 +0.1
113,648 - ABZR87_RS00550 0.57 +0.1

Or see this region's nucleotide sequence