Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00055 and ABZR87_RS00060 are separated by 10 nucleotides ABZR87_RS00060 and ABZR87_RS00065 are separated by 12 nucleotides ABZR87_RS00065 and ABZR87_RS00070 overlap by 16 nucleotides
ABZR87_RS00055: ABZR87_RS00055 - threonine-phosphate decarboxylase CobD, at 13,001 to 14,008
_RS00055
ABZR87_RS00060: ABZR87_RS00060 - cobalamin-binding protein, at 14,019 to 14,975
_RS00060
ABZR87_RS00065: ABZR87_RS00065 - alpha-ribazole phosphatase, at 14,988 to 15,575
_RS00065
ABZR87_RS00070: ABZR87_RS00070 - adenosylcobinamide-GDP ribazoletransferase, at 15,560 to 16,330
_RS00070
Position (kb) 14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 13.187 kb on + strand, within ABZR87_RS00055 at 13.307 kb on + strand, within ABZR87_RS00055 at 13.513 kb on + strand, within ABZR87_RS00055 at 13.513 kb on + strand, within ABZR87_RS00055 at 13.598 kb on + strand, within ABZR87_RS00055 at 13.599 kb on - strand, within ABZR87_RS00055 at 13.872 kb on + strand, within ABZR87_RS00055 at 13.872 kb on + strand, within ABZR87_RS00055 at 13.872 kb on + strand, within ABZR87_RS00055 at 13.873 kb on - strand, within ABZR87_RS00055 at 13.983 kb on + strand at 13.983 kb on + strand at 13.984 kb on - strand at 13.984 kb on - strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.251 kb on - strand, within ABZR87_RS00060 at 14.444 kb on + strand, within ABZR87_RS00060 at 14.444 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.581 kb on - strand, within ABZR87_RS00060 at 14.581 kb on - strand, within ABZR87_RS00060 at 14.581 kb on - strand, within ABZR87_RS00060 at 15.831 kb on + strand, within ABZR87_RS00070 at 15.831 kb on + strand, within ABZR87_RS00070 at 15.831 kb on + strand, within ABZR87_RS00070 at 15.831 kb on + strand, within ABZR87_RS00070 at 15.832 kb on - strand, within ABZR87_RS00070 at 15.832 kb on - strand, within ABZR87_RS00070 at 15.832 kb on - strand, within ABZR87_RS00070 at 15.832 kb on - strand, within ABZR87_RS00070 at 15.832 kb on - strand, within ABZR87_RS00070
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 13,187 + ABZR87_RS00055 0.18 +1.3 13,307 + ABZR87_RS00055 0.30 +0.8 13,513 + ABZR87_RS00055 0.51 +0.3 13,513 + ABZR87_RS00055 0.51 +0.1 13,598 + ABZR87_RS00055 0.59 +0.0 13,599 - ABZR87_RS00055 0.59 -0.7 13,872 + ABZR87_RS00055 0.86 +0.5 13,872 + ABZR87_RS00055 0.86 -0.5 13,872 + ABZR87_RS00055 0.86 +1.1 13,873 - ABZR87_RS00055 0.87 -0.0 13,983 + -0.2 13,983 + -0.5 13,984 - -0.3 13,984 - -0.2 14,055 + +1.0 14,055 + +0.3 14,055 + +0.8 14,055 + -0.9 14,055 + +0.2 14,055 + +0.6 14,055 + -0.5 14,056 - +0.6 14,056 - -0.7 14,056 - +0.2 14,056 - -1.6 14,056 - -1.3 14,056 - -0.3 14,056 - +1.1 14,056 - +0.8 14,056 - -0.5 14,056 - +0.3 14,251 - ABZR87_RS00060 0.24 -1.6 14,444 + ABZR87_RS00060 0.44 -1.5 14,444 + ABZR87_RS00060 0.44 -0.2 14,580 + ABZR87_RS00060 0.59 -1.8 14,580 + ABZR87_RS00060 0.59 +0.9 14,580 + ABZR87_RS00060 0.59 -1.9 14,580 + ABZR87_RS00060 0.59 -1.4 14,580 + ABZR87_RS00060 0.59 -0.7 14,580 + ABZR87_RS00060 0.59 -0.5 14,580 + ABZR87_RS00060 0.59 +0.1 14,581 - ABZR87_RS00060 0.59 +0.7 14,581 - ABZR87_RS00060 0.59 -0.6 14,581 - ABZR87_RS00060 0.59 -1.1 15,831 + ABZR87_RS00070 0.35 +0.2 15,831 + ABZR87_RS00070 0.35 -0.1 15,831 + ABZR87_RS00070 0.35 +0.6 15,831 + ABZR87_RS00070 0.35 -0.7 15,832 - ABZR87_RS00070 0.35 +0.6 15,832 - ABZR87_RS00070 0.35 +0.3 15,832 - ABZR87_RS00070 0.35 +0.1 15,832 - ABZR87_RS00070 0.35 +1.2 15,832 - ABZR87_RS00070 0.35 +0.0
Or see this region's nucleotide sequence