Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22255

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,353,659	+		ABZR87_RS22250	0.15	-1.3
1,353,659	+		ABZR87_RS22250	0.15	-1.0
1,353,659	+		ABZR87_RS22250	0.15	+0.1
1,353,660	-		ABZR87_RS22250	0.15	-0.5
1,353,690	-		ABZR87_RS22250	0.18	-1.0
1,353,734	+		ABZR87_RS22250	0.22	+0.7
1,353,734	+		ABZR87_RS22250	0.22	-0.4
1,353,735	-		ABZR87_RS22250	0.22	-1.1
1,353,744	+		ABZR87_RS22250	0.23	+0.0
1,353,790	-		ABZR87_RS22250	0.27	-0.8
1,353,790	-		ABZR87_RS22250	0.27	+0.2
1,353,939	-		ABZR87_RS22250	0.41	+0.1
1,353,939	-		ABZR87_RS22250	0.41	-1.4
1,353,939	-		ABZR87_RS22250	0.41	+1.1
1,354,218	+		ABZR87_RS22250	0.66	+0.1
1,354,218	+		ABZR87_RS22250	0.66	-0.0
1,354,219	-		ABZR87_RS22250	0.66	-0.0
1,354,219	-		ABZR87_RS22250	0.66	-0.2
1,354,379	+		ABZR87_RS22250	0.81	-0.4
1,354,379	+		ABZR87_RS22250	0.81	-1.1
1,354,379	+		ABZR87_RS22250	0.81	-2.4
1,354,379	+		ABZR87_RS22250	0.81	-0.1
1,354,379	+		ABZR87_RS22250	0.81	-0.8
1,354,380	-		ABZR87_RS22250	0.81	-0.6
1,354,380	-		ABZR87_RS22250	0.81	-1.6
1,354,380	-		ABZR87_RS22250	0.81	-3.4
1,354,509	+				-2.2
1,354,509	+				-1.0
1,354,509	+				+0.2
1,354,509	+				-0.6
1,354,509	+				-1.3
1,354,510	-				-1.1
1,354,510	-				-2.7
1,354,510	-				-0.6
1,354,510	-				+0.4
1,355,098	+		ABZR87_RS22255	0.44	-2.1
1,355,295	+		ABZR87_RS22255	0.62	+0.4
1,355,295	+		ABZR87_RS22255	0.62	-1.3
1,355,295	+		ABZR87_RS22255	0.62	-0.4
1,355,295	+		ABZR87_RS22255	0.62	-1.2
1,355,510	-		ABZR87_RS22255	0.81	-0.0
1,355,794	+				+0.0
1,355,794	+				-0.1
1,355,795	-				-1.2
1,355,795	-				-0.5
1,355,795	-				+2.1
1,355,809	+		ABZR87_RS22260	0.11	-1.1
1,355,985	-		ABZR87_RS22260	0.35	-0.4
1,356,176	+		ABZR87_RS22260	0.61	-0.3
1,356,371	+		ABZR87_RS22260	0.87	-2.0
1,356,414	-				+0.2
1,356,414	-				+0.0
1,356,414	-				-0.4
1,356,458	+				+0.4
1,356,459	-				-0.3
1,356,459	-				+0.1
1,356,499	+				-1.0
1,356,499	+				-0.8
1,356,499	+				-0.4
1,356,500	-				-0.2
1,356,500	-				+0.4
1,356,500	-				-0.4
1,356,563	-				-0.7
1,356,628	+		ABZR87_RS22265	0.17	-0.6
1,356,628	+		ABZR87_RS22265	0.17	-0.9
1,356,628	+		ABZR87_RS22265	0.17	-0.3
1,356,628	+		ABZR87_RS22265	0.17	-2.0
1,356,629	-		ABZR87_RS22265	0.17	-0.8