Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22015

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21995 and ABZR87_RS22000 are separated by 34 nucleotidesABZR87_RS22000 and ABZR87_RS22005 overlap by 4 nucleotidesABZR87_RS22005 and ABZR87_RS22010 are separated by 32 nucleotidesABZR87_RS22010 and ABZR87_RS22015 overlap by 1 nucleotidesABZR87_RS22015 and ABZR87_RS22020 are separated by 84 nucleotides ABZR87_RS21995: ABZR87_RS21995 - phage tail tape measure protein, at 1,306,423 to 1,308,375 _RS21995 ABZR87_RS22000: ABZR87_RS22000 - hypothetical protein, at 1,308,410 to 1,308,814 _RS22000 ABZR87_RS22005: ABZR87_RS22005 - hypothetical protein, at 1,308,811 to 1,308,945 _RS22005 ABZR87_RS22010: ABZR87_RS22010 - hypothetical protein, at 1,308,978 to 1,309,337 _RS22010 ABZR87_RS22015: ABZR87_RS22015 - hypothetical protein, at 1,309,337 to 1,309,768 _RS22015 ABZR87_RS22020: ABZR87_RS22020 - tail protein, at 1,309,853 to 1,311,385 _RS22020 Position (kb) 1309 1310Strain fitness (log2 ratio) -2 -1 0 1at 1308.359 kb on + strandat 1308.360 kb on - strandat 1308.375 kb on + strandat 1308.375 kb on + strandat 1308.700 kb on + strand, within ABZR87_RS22000at 1308.700 kb on + strand, within ABZR87_RS22000at 1308.701 kb on - strand, within ABZR87_RS22000at 1309.078 kb on + strand, within ABZR87_RS22010at 1309.079 kb on - strand, within ABZR87_RS22010at 1309.171 kb on + strand, within ABZR87_RS22010at 1309.172 kb on - strand, within ABZR87_RS22010at 1309.172 kb on - strand, within ABZR87_RS22010at 1309.172 kb on - strand, within ABZR87_RS22010at 1309.522 kb on - strand, within ABZR87_RS22015at 1309.548 kb on + strand, within ABZR87_RS22015at 1309.659 kb on - strand, within ABZR87_RS22015at 1309.735 kb on - strandat 1309.735 kb on - strandat 1309.768 kb on + strandat 1309.768 kb on + strandat 1309.769 kb on - strandat 1309.769 kb on - strandat 1309.822 kb on + strandat 1309.822 kb on + strandat 1309.854 kb on + strandat 1309.854 kb on + strandat 1309.935 kb on + strandat 1309.935 kb on + strandat 1309.936 kb on - strandat 1309.962 kb on + strandat 1310.133 kb on + strand, within ABZR87_RS22020at 1310.134 kb on - strand, within ABZR87_RS22020at 1310.170 kb on - strand, within ABZR87_RS22020at 1310.170 kb on - strand, within ABZR87_RS22020at 1310.187 kb on + strand, within ABZR87_RS22020at 1310.187 kb on + strand, within ABZR87_RS22020at 1310.187 kb on + strand, within ABZR87_RS22020at 1310.188 kb on - strand, within ABZR87_RS22020at 1310.188 kb on - strand, within ABZR87_RS22020at 1310.247 kb on + strand, within ABZR87_RS22020at 1310.248 kb on - strand, within ABZR87_RS22020at 1310.248 kb on - strand, within ABZR87_RS22020at 1310.248 kb on - strand, within ABZR87_RS22020at 1310.322 kb on + strand, within ABZR87_RS22020at 1310.364 kb on + strand, within ABZR87_RS22020at 1310.475 kb on + strand, within ABZR87_RS22020at 1310.476 kb on - strand, within ABZR87_RS22020at 1310.476 kb on - strand, within ABZR87_RS22020at 1310.476 kb on - strand, within ABZR87_RS22020at 1310.476 kb on - strand, within ABZR87_RS22020at 1310.586 kb on + strand, within ABZR87_RS22020at 1310.586 kb on + strand, within ABZR87_RS22020at 1310.586 kb on + strand, within ABZR87_RS22020at 1310.586 kb on + strand, within ABZR87_RS22020at 1310.586 kb on + strand, within ABZR87_RS22020at 1310.586 kb on + strand, within ABZR87_RS22020at 1310.586 kb on + strand, within ABZR87_RS22020at 1310.587 kb on - strand, within ABZR87_RS22020at 1310.587 kb on - strand, within ABZR87_RS22020at 1310.587 kb on - strand, within ABZR87_RS22020at 1310.587 kb on - strand, within ABZR87_RS22020at 1310.587 kb on - strand, within ABZR87_RS22020at 1310.587 kb on - strand, within ABZR87_RS22020at 1310.688 kb on + strand, within ABZR87_RS22020at 1310.688 kb on + strand, within ABZR87_RS22020at 1310.689 kb on - strand, within ABZR87_RS22020at 1310.689 kb on - strand, within ABZR87_RS22020at 1310.689 kb on - strand, within ABZR87_RS22020

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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1,308,359 + -1.1
1,308,360 - -1.4
1,308,375 + -0.9
1,308,375 + +0.4
1,308,700 + ABZR87_RS22000 0.72 -2.2
1,308,700 + ABZR87_RS22000 0.72 -1.0
1,308,701 - ABZR87_RS22000 0.72 -0.2
1,309,078 + ABZR87_RS22010 0.28 -0.4
1,309,079 - ABZR87_RS22010 0.28 +1.7
1,309,171 + ABZR87_RS22010 0.54 +0.4
1,309,172 - ABZR87_RS22010 0.54 +0.4
1,309,172 - ABZR87_RS22010 0.54 -0.4
1,309,172 - ABZR87_RS22010 0.54 +0.3
1,309,522 - ABZR87_RS22015 0.43 +1.0
1,309,548 + ABZR87_RS22015 0.49 -0.7
1,309,659 - ABZR87_RS22015 0.75 -1.2
1,309,735 - +0.1
1,309,735 - -1.0
1,309,768 + -0.5
1,309,768 + -0.5
1,309,769 - +0.2
1,309,769 - +0.5
1,309,822 + +1.3
1,309,822 + -1.6
1,309,854 + +0.3
1,309,854 + -1.2
1,309,935 + -2.0
1,309,935 + +0.5
1,309,936 - -0.1
1,309,962 + -0.2
1,310,133 + ABZR87_RS22020 0.18 -1.3
1,310,134 - ABZR87_RS22020 0.18 +0.5
1,310,170 - ABZR87_RS22020 0.21 -1.2
1,310,170 - ABZR87_RS22020 0.21 +0.3
1,310,187 + ABZR87_RS22020 0.22 -0.3
1,310,187 + ABZR87_RS22020 0.22 +0.4
1,310,187 + ABZR87_RS22020 0.22 -0.8
1,310,188 - ABZR87_RS22020 0.22 +1.2
1,310,188 - ABZR87_RS22020 0.22 +0.9
1,310,247 + ABZR87_RS22020 0.26 -0.2
1,310,248 - ABZR87_RS22020 0.26 +0.6
1,310,248 - ABZR87_RS22020 0.26 -0.6
1,310,248 - ABZR87_RS22020 0.26 +0.3
1,310,322 + ABZR87_RS22020 0.31 -1.3
1,310,364 + ABZR87_RS22020 0.33 +0.6
1,310,475 + ABZR87_RS22020 0.41 +0.1
1,310,476 - ABZR87_RS22020 0.41 -0.2
1,310,476 - ABZR87_RS22020 0.41 -1.1
1,310,476 - ABZR87_RS22020 0.41 +0.6
1,310,476 - ABZR87_RS22020 0.41 -0.3
1,310,586 + ABZR87_RS22020 0.48 -0.0
1,310,586 + ABZR87_RS22020 0.48 -0.4
1,310,586 + ABZR87_RS22020 0.48 +0.1
1,310,586 + ABZR87_RS22020 0.48 +0.1
1,310,586 + ABZR87_RS22020 0.48 -0.4
1,310,586 + ABZR87_RS22020 0.48 +0.6
1,310,586 + ABZR87_RS22020 0.48 -0.6
1,310,587 - ABZR87_RS22020 0.48 +0.4
1,310,587 - ABZR87_RS22020 0.48 -2.2
1,310,587 - ABZR87_RS22020 0.48 -0.9
1,310,587 - ABZR87_RS22020 0.48 +0.1
1,310,587 - ABZR87_RS22020 0.48 -0.8
1,310,587 - ABZR87_RS22020 0.48 -0.1
1,310,688 + ABZR87_RS22020 0.54 -0.0
1,310,688 + ABZR87_RS22020 0.54 +0.8
1,310,689 - ABZR87_RS22020 0.55 +1.1
1,310,689 - ABZR87_RS22020 0.55 -0.1
1,310,689 - ABZR87_RS22020 0.55 +0.1

Or see this region's nucleotide sequence