Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20830

Experiment: Acanthamoeba sp., muxed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS20820 and ABZR87_RS20825 are separated by 46 nucleotidesABZR87_RS20825 and ABZR87_RS20830 overlap by 4 nucleotidesABZR87_RS20830 and ABZR87_RS20835 are separated by 38 nucleotidesABZR87_RS20835 and ABZR87_RS20840 are separated by 3 nucleotides ABZR87_RS20820: ABZR87_RS20820 - 2-keto-3-deoxygluconate transporter, at 1,056,940 to 1,057,956 _RS20820 ABZR87_RS20825: ABZR87_RS20825 - nuclear transport factor 2 family protein, at 1,058,003 to 1,058,461 _RS20825 ABZR87_RS20830: ABZR87_RS20830 - SDR family oxidoreductase, at 1,058,458 to 1,059,216 _RS20830 ABZR87_RS20835: ABZR87_RS20835 - ureidoglycolate lyase, at 1,059,255 to 1,060,103 _RS20835 ABZR87_RS20840: ABZR87_RS20840 - LysR family transcriptional regulator, at 1,060,107 to 1,061,024 _RS20840 Position (kb) 1058 1059 1060Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1057.485 kb on + strand, within ABZR87_RS20820at 1057.486 kb on - strand, within ABZR87_RS20820at 1057.486 kb on - strand, within ABZR87_RS20820at 1058.192 kb on + strand, within ABZR87_RS20825at 1058.192 kb on + strand, within ABZR87_RS20825at 1058.192 kb on + strand, within ABZR87_RS20825at 1058.192 kb on + strand, within ABZR87_RS20825at 1058.193 kb on - strand, within ABZR87_RS20825at 1058.193 kb on - strand, within ABZR87_RS20825at 1058.442 kb on - strandat 1058.442 kb on - strandat 1058.442 kb on - strandat 1058.718 kb on - strand, within ABZR87_RS20830at 1058.718 kb on - strand, within ABZR87_RS20830at 1058.791 kb on + strand, within ABZR87_RS20830at 1058.792 kb on - strand, within ABZR87_RS20830at 1058.792 kb on - strand, within ABZR87_RS20830at 1058.902 kb on + strand, within ABZR87_RS20830at 1058.903 kb on - strand, within ABZR87_RS20830at 1059.006 kb on - strand, within ABZR87_RS20830at 1059.145 kb on + strandat 1059.146 kb on - strandat 1059.218 kb on - strandat 1059.492 kb on + strand, within ABZR87_RS20835at 1059.493 kb on - strand, within ABZR87_RS20835at 1059.663 kb on + strand, within ABZR87_RS20835at 1059.663 kb on + strand, within ABZR87_RS20835at 1059.663 kb on + strand, within ABZR87_RS20835at 1059.664 kb on - strand, within ABZR87_RS20835at 1059.664 kb on - strand, within ABZR87_RS20835at 1059.691 kb on - strand, within ABZR87_RS20835at 1059.691 kb on - strand, within ABZR87_RS20835at 1059.691 kb on - strand, within ABZR87_RS20835at 1059.702 kb on + strand, within ABZR87_RS20835at 1059.890 kb on + strand, within ABZR87_RS20835at 1059.930 kb on + strand, within ABZR87_RS20835at 1059.930 kb on + strand, within ABZR87_RS20835at 1059.930 kb on + strand, within ABZR87_RS20835at 1059.931 kb on - strand, within ABZR87_RS20835at 1059.931 kb on - strand, within ABZR87_RS20835at 1060.023 kb on + strandat 1060.024 kb on - strandat 1060.024 kb on - strandat 1060.108 kb on + strandat 1060.109 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
remove
1,057,485 + ABZR87_RS20820 0.54 -0.6
1,057,486 - ABZR87_RS20820 0.54 +0.6
1,057,486 - ABZR87_RS20820 0.54 -0.3
1,058,192 + ABZR87_RS20825 0.41 +1.0
1,058,192 + ABZR87_RS20825 0.41 -0.3
1,058,192 + ABZR87_RS20825 0.41 -1.1
1,058,192 + ABZR87_RS20825 0.41 +0.6
1,058,193 - ABZR87_RS20825 0.41 +0.3
1,058,193 - ABZR87_RS20825 0.41 -1.9
1,058,442 - +0.8
1,058,442 - -1.2
1,058,442 - +0.2
1,058,718 - ABZR87_RS20830 0.34 +0.6
1,058,718 - ABZR87_RS20830 0.34 +0.2
1,058,791 + ABZR87_RS20830 0.44 -0.5
1,058,792 - ABZR87_RS20830 0.44 -0.2
1,058,792 - ABZR87_RS20830 0.44 +0.4
1,058,902 + ABZR87_RS20830 0.58 +0.2
1,058,903 - ABZR87_RS20830 0.59 +0.1
1,059,006 - ABZR87_RS20830 0.72 -0.1
1,059,145 + +0.4
1,059,146 - -0.8
1,059,218 - -0.2
1,059,492 + ABZR87_RS20835 0.28 +3.3
1,059,493 - ABZR87_RS20835 0.28 -0.2
1,059,663 + ABZR87_RS20835 0.48 +0.7
1,059,663 + ABZR87_RS20835 0.48 -0.7
1,059,663 + ABZR87_RS20835 0.48 -0.1
1,059,664 - ABZR87_RS20835 0.48 +0.6
1,059,664 - ABZR87_RS20835 0.48 +0.6
1,059,691 - ABZR87_RS20835 0.51 -0.5
1,059,691 - ABZR87_RS20835 0.51 +0.3
1,059,691 - ABZR87_RS20835 0.51 +1.6
1,059,702 + ABZR87_RS20835 0.53 +1.0
1,059,890 + ABZR87_RS20835 0.75 -2.1
1,059,930 + ABZR87_RS20835 0.80 -2.1
1,059,930 + ABZR87_RS20835 0.80 -0.0
1,059,930 + ABZR87_RS20835 0.80 +0.3
1,059,931 - ABZR87_RS20835 0.80 +0.2
1,059,931 - ABZR87_RS20835 0.80 +1.3
1,060,023 + -0.3
1,060,024 - +0.1
1,060,024 - -0.5
1,060,108 + +0.3
1,060,109 - +0.6

Or see this region's nucleotide sequence