Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20325

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20320 and ABZR87_RS20325 are separated by 41 nucleotidesABZR87_RS20325 and ABZR87_RS20330 are separated by 18 nucleotides ABZR87_RS20320: ABZR87_RS20320 - galactarate dehydratase, at 946,590 to 948,191 _RS20320 ABZR87_RS20325: ABZR87_RS20325 - enolase C-terminal domain-like protein, at 948,233 to 949,642 _RS20325 ABZR87_RS20330: ABZR87_RS20330 - MFS transporter, at 949,661 to 951,013 _RS20330 Position (kb) 948 949 950Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 947.650 kb on + strand, within ABZR87_RS20320at 947.651 kb on - strand, within ABZR87_RS20320at 947.651 kb on - strand, within ABZR87_RS20320at 947.651 kb on - strand, within ABZR87_RS20320at 947.651 kb on - strand, within ABZR87_RS20320at 947.651 kb on - strand, within ABZR87_RS20320at 947.728 kb on + strand, within ABZR87_RS20320at 947.729 kb on - strand, within ABZR87_RS20320at 947.729 kb on - strand, within ABZR87_RS20320at 947.729 kb on - strand, within ABZR87_RS20320at 947.729 kb on - strand, within ABZR87_RS20320at 947.813 kb on - strand, within ABZR87_RS20320at 947.827 kb on + strand, within ABZR87_RS20320at 947.828 kb on - strand, within ABZR87_RS20320at 947.930 kb on + strand, within ABZR87_RS20320at 947.956 kb on + strand, within ABZR87_RS20320at 947.956 kb on + strand, within ABZR87_RS20320at 947.974 kb on + strand, within ABZR87_RS20320at 948.264 kb on + strandat 948.264 kb on + strandat 948.264 kb on + strandat 948.264 kb on + strandat 948.265 kb on - strandat 948.265 kb on - strandat 948.285 kb on + strandat 948.285 kb on + strandat 948.285 kb on + strandat 948.285 kb on + strandat 948.285 kb on + strandat 948.333 kb on + strandat 948.333 kb on + strandat 948.334 kb on - strandat 948.650 kb on - strand, within ABZR87_RS20325at 948.801 kb on + strand, within ABZR87_RS20325at 948.801 kb on + strand, within ABZR87_RS20325at 948.802 kb on - strand, within ABZR87_RS20325at 948.978 kb on + strand, within ABZR87_RS20325at 948.979 kb on - strand, within ABZR87_RS20325at 949.116 kb on + strand, within ABZR87_RS20325at 949.116 kb on + strand, within ABZR87_RS20325at 949.117 kb on - strand, within ABZR87_RS20325at 949.117 kb on - strand, within ABZR87_RS20325at 949.117 kb on - strand, within ABZR87_RS20325at 949.125 kb on + strand, within ABZR87_RS20325at 949.125 kb on + strand, within ABZR87_RS20325at 949.384 kb on + strand, within ABZR87_RS20325at 949.384 kb on + strand, within ABZR87_RS20325at 949.385 kb on - strand, within ABZR87_RS20325at 949.385 kb on - strand, within ABZR87_RS20325at 949.385 kb on - strand, within ABZR87_RS20325at 949.513 kb on + strandat 949.644 kb on + strandat 949.644 kb on + strandat 949.645 kb on - strandat 949.662 kb on + strandat 949.711 kb on - strandat 949.711 kb on - strandat 949.746 kb on + strandat 949.747 kb on - strandat 949.788 kb on + strandat 949.788 kb on + strandat 949.788 kb on + strandat 949.789 kb on - strandat 949.971 kb on + strand, within ABZR87_RS20330at 949.972 kb on - strand, within ABZR87_RS20330at 949.972 kb on - strand, within ABZR87_RS20330at 949.972 kb on - strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on + strand, within ABZR87_RS20330at 950.172 kb on - strand, within ABZR87_RS20330at 950.220 kb on + strand, within ABZR87_RS20330at 950.220 kb on + strand, within ABZR87_RS20330at 950.221 kb on - strand, within ABZR87_RS20330at 950.232 kb on + strand, within ABZR87_RS20330at 950.233 kb on - strand, within ABZR87_RS20330at 950.274 kb on + strand, within ABZR87_RS20330at 950.320 kb on + strand, within ABZR87_RS20330at 950.320 kb on + strand, within ABZR87_RS20330at 950.321 kb on - strand, within ABZR87_RS20330at 950.321 kb on - strand, within ABZR87_RS20330at 950.349 kb on + strand, within ABZR87_RS20330at 950.350 kb on - strand, within ABZR87_RS20330at 950.450 kb on - strand, within ABZR87_RS20330at 950.450 kb on - strand, within ABZR87_RS20330at 950.450 kb on - strand, within ABZR87_RS20330

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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947,650 + ABZR87_RS20320 0.66 +2.0
947,651 - ABZR87_RS20320 0.66 +0.2
947,651 - ABZR87_RS20320 0.66 -2.3
947,651 - ABZR87_RS20320 0.66 -1.0
947,651 - ABZR87_RS20320 0.66 -1.2
947,651 - ABZR87_RS20320 0.66 +0.8
947,728 + ABZR87_RS20320 0.71 -0.6
947,729 - ABZR87_RS20320 0.71 -0.5
947,729 - ABZR87_RS20320 0.71 -0.4
947,729 - ABZR87_RS20320 0.71 +0.6
947,729 - ABZR87_RS20320 0.71 -0.9
947,813 - ABZR87_RS20320 0.76 -0.6
947,827 + ABZR87_RS20320 0.77 -0.1
947,828 - ABZR87_RS20320 0.77 -0.8
947,930 + ABZR87_RS20320 0.84 +0.0
947,956 + ABZR87_RS20320 0.85 -0.0
947,956 + ABZR87_RS20320 0.85 -0.0
947,974 + ABZR87_RS20320 0.86 +1.1
948,264 + -1.5
948,264 + -0.3
948,264 + -0.2
948,264 + +0.9
948,265 - +0.2
948,265 - +0.2
948,285 + -0.9
948,285 + +0.3
948,285 + +0.1
948,285 + -2.8
948,285 + -0.3
948,333 + +0.1
948,333 + +2.0
948,334 - +1.5
948,650 - ABZR87_RS20325 0.30 +0.3
948,801 + ABZR87_RS20325 0.40 -0.5
948,801 + ABZR87_RS20325 0.40 -1.6
948,802 - ABZR87_RS20325 0.40 -2.3
948,978 + ABZR87_RS20325 0.53 -0.7
948,979 - ABZR87_RS20325 0.53 +0.3
949,116 + ABZR87_RS20325 0.63 +0.0
949,116 + ABZR87_RS20325 0.63 +1.5
949,117 - ABZR87_RS20325 0.63 +1.0
949,117 - ABZR87_RS20325 0.63 -0.4
949,117 - ABZR87_RS20325 0.63 -0.0
949,125 + ABZR87_RS20325 0.63 +0.5
949,125 + ABZR87_RS20325 0.63 -0.4
949,384 + ABZR87_RS20325 0.82 -0.4
949,384 + ABZR87_RS20325 0.82 -0.9
949,385 - ABZR87_RS20325 0.82 -0.7
949,385 - ABZR87_RS20325 0.82 -0.1
949,385 - ABZR87_RS20325 0.82 -0.6
949,513 + +0.1
949,644 + +0.2
949,644 + -0.2
949,645 - -0.6
949,662 + -0.7
949,711 - -0.0
949,711 - +0.5
949,746 + -0.5
949,747 - +0.5
949,788 + +0.5
949,788 + +0.0
949,788 + -0.7
949,789 - +0.4
949,971 + ABZR87_RS20330 0.23 -0.3
949,972 - ABZR87_RS20330 0.23 -0.8
949,972 - ABZR87_RS20330 0.23 +0.6
949,972 - ABZR87_RS20330 0.23 +0.5
950,172 + ABZR87_RS20330 0.38 -0.3
950,172 + ABZR87_RS20330 0.38 +1.0
950,172 + ABZR87_RS20330 0.38 -0.1
950,172 + ABZR87_RS20330 0.38 -1.2
950,172 - ABZR87_RS20330 0.38 -0.7
950,220 + ABZR87_RS20330 0.41 +0.4
950,220 + ABZR87_RS20330 0.41 +0.4
950,221 - ABZR87_RS20330 0.41 -0.6
950,232 + ABZR87_RS20330 0.42 -0.6
950,233 - ABZR87_RS20330 0.42 -1.2
950,274 + ABZR87_RS20330 0.45 +0.8
950,320 + ABZR87_RS20330 0.49 +0.5
950,320 + ABZR87_RS20330 0.49 -0.8
950,321 - ABZR87_RS20330 0.49 -0.3
950,321 - ABZR87_RS20330 0.49 -0.3
950,349 + ABZR87_RS20330 0.51 -0.6
950,350 - ABZR87_RS20330 0.51 +0.0
950,450 - ABZR87_RS20330 0.58 +0.6
950,450 - ABZR87_RS20330 0.58 -0.5
950,450 - ABZR87_RS20330 0.58 -0.8

Or see this region's nucleotide sequence