Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20130

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
897,059	+		ABZR87_RS20125	0.71	+1.6
897,059	+		ABZR87_RS20125	0.71	-0.7
897,059	+		ABZR87_RS20125	0.71	-1.4
897,059	+		ABZR87_RS20125	0.71	+0.3
897,059	+		ABZR87_RS20125	0.71	-0.8
897,059	+		ABZR87_RS20125	0.71	+0.3
897,059	+		ABZR87_RS20125	0.71	+0.2
897,060	-		ABZR87_RS20125	0.71	-0.5
897,060	-		ABZR87_RS20125	0.71	-0.6
897,060	-		ABZR87_RS20125	0.71	-0.8
897,060	-		ABZR87_RS20125	0.71	+0.2
897,060	-		ABZR87_RS20125	0.71	-0.4
897,060	-		ABZR87_RS20125	0.71	+0.7
897,060	-		ABZR87_RS20125	0.71	-0.4
897,060	-		ABZR87_RS20125	0.71	-0.1
897,060	-		ABZR87_RS20125	0.71	-0.4
897,383	+		ABZR87_RS20125	0.82	-0.9
897,383	+		ABZR87_RS20125	0.82	-0.7
897,420	+		ABZR87_RS20125	0.84	-0.2
897,421	-		ABZR87_RS20125	0.84	-0.0
897,473	+		ABZR87_RS20125	0.85	+0.1
897,834	+				-0.3
897,834	+				-0.6
897,834	+				-0.4
897,835	-				-1.5
897,835	-				+1.2
897,835	-				+0.3
897,835	-				-1.2
897,835	-				+0.5
897,835	-				-1.7
897,835	-				-1.3
897,836	+				+0.9
897,836	+				-0.0
897,836	+				+0.6
897,836	+				-0.7
897,836	+				+0.3
897,837	-				-0.0
897,837	-				-0.2
897,917	+				-0.5
897,917	+				-2.2
897,918	-				+0.7
897,954	+				-1.6
897,954	+				-1.2
897,954	+				-0.1
897,954	+				+0.7
897,955	-				-0.1
897,955	-				+1.4
898,010	-				-0.0
898,040	-				+0.8
898,051	+				-0.3
898,052	-				-1.7
898,052	-				+0.6
898,052	-				+1.4
898,052	-				+0.1
898,052	-				+0.3
898,052	-				-1.6
898,074	-				-1.0
898,074	-				+0.2
898,074	-				-0.0
898,074	-				+0.2
898,211	+		ABZR87_RS20130	0.23	-0.1
898,211	+		ABZR87_RS20130	0.23	-0.9
898,212	-		ABZR87_RS20130	0.23	-0.7
898,212	-		ABZR87_RS20130	0.23	+1.3
898,212	-		ABZR87_RS20130	0.23	+0.2
898,212	-		ABZR87_RS20130	0.23	-0.1
898,376	+		ABZR87_RS20130	0.44	-0.9
898,376	+		ABZR87_RS20130	0.44	-0.9
898,651	+		ABZR87_RS20130	0.80	+0.8
898,651	+		ABZR87_RS20130	0.80	-1.1
898,724	+		ABZR87_RS20130	0.89	-0.8
898,724	+		ABZR87_RS20130	0.89	-0.4
898,724	+		ABZR87_RS20130	0.89	-0.8
898,725	-		ABZR87_RS20130	0.89	+0.4
898,725	-		ABZR87_RS20130	0.89	-0.9
898,725	-		ABZR87_RS20130	0.89	+0.9
898,725	-		ABZR87_RS20130	0.89	-1.7
898,800	-				-0.1
898,800	-				+0.8
898,826	-				+1.9
898,826	-				-0.3
898,826	-				+2.3
898,843	+				+0.2
898,844	-				+0.5
898,844	-				-0.5
898,844	-				-1.0
898,844	-				-0.7
898,844	-				-0.7
898,850	+				+0.4
898,888	+				-0.6
898,889	-				-0.3
898,955	+				-0.1
898,965	+				-2.1
898,966	-				+0.6
899,019	+				-0.8
899,066	+				+0.2
899,091	+				-0.6
899,091	+				+0.9
899,092	-				+1.6
899,092	-				+0.7
899,287	+		ABZR87_RS20135	0.26	+0.8
899,577	+		ABZR87_RS20135	0.59	+0.1
899,578	-		ABZR87_RS20135	0.60	+0.2
899,703	+		ABZR87_RS20135	0.74	-1.9
899,703	+		ABZR87_RS20135	0.74	+0.5
899,703	+		ABZR87_RS20135	0.74	-0.1
899,703	+		ABZR87_RS20135	0.74	-1.8
899,703	+		ABZR87_RS20135	0.74	-2.0
899,703	+		ABZR87_RS20135	0.74	+1.5
899,703	+		ABZR87_RS20135	0.74	+0.6
899,704	-		ABZR87_RS20135	0.74	+0.7
899,704	-		ABZR87_RS20135	0.74	-0.7
899,704	-		ABZR87_RS20135	0.74	-0.5
899,704	-		ABZR87_RS20135	0.74	-0.3
899,704	-		ABZR87_RS20135	0.74	-1.0
899,803	-		ABZR87_RS20135	0.86	-0.1