Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20060

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20050 and ABZR87_RS20055 are separated by 51 nucleotidesABZR87_RS20055 and ABZR87_RS20060 are separated by 38 nucleotidesABZR87_RS20060 and ABZR87_RS20065 are separated by 38 nucleotidesABZR87_RS20065 and ABZR87_RS20070 are separated by 287 nucleotides ABZR87_RS20050: ABZR87_RS20050 - flavodoxin family protein, at 875,288 to 875,818 _RS20050 ABZR87_RS20055: ABZR87_RS20055 - BON domain-containing protein, at 875,870 to 876,523 _RS20055 ABZR87_RS20060: ABZR87_RS20060 - universal stress protein, at 876,562 to 877,401 _RS20060 ABZR87_RS20065: ABZR87_RS20065 - universal stress protein, at 877,440 to 877,940 _RS20065 ABZR87_RS20070: ABZR87_RS20070 - CBS domain-containing protein, at 878,228 to 878,695 _RS20070 Position (kb) 876 877 878Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 875.594 kb on + strand, within ABZR87_RS20050at 875.634 kb on + strand, within ABZR87_RS20050at 875.635 kb on - strand, within ABZR87_RS20050at 875.635 kb on - strand, within ABZR87_RS20050at 875.635 kb on - strand, within ABZR87_RS20050at 875.635 kb on - strand, within ABZR87_RS20050at 875.639 kb on - strand, within ABZR87_RS20050at 875.660 kb on + strand, within ABZR87_RS20050at 875.660 kb on + strand, within ABZR87_RS20050at 875.793 kb on + strandat 875.793 kb on + strandat 875.796 kb on + strandat 875.796 kb on + strandat 875.796 kb on + strandat 875.796 kb on + strandat 875.796 kb on + strandat 875.797 kb on - strandat 875.797 kb on - strandat 875.823 kb on + strandat 875.824 kb on - strandat 875.824 kb on - strandat 875.871 kb on + strandat 875.872 kb on - strandat 875.872 kb on - strandat 875.872 kb on - strandat 875.973 kb on + strand, within ABZR87_RS20055at 875.973 kb on + strand, within ABZR87_RS20055at 875.974 kb on - strand, within ABZR87_RS20055at 876.242 kb on + strand, within ABZR87_RS20055at 876.243 kb on - strand, within ABZR87_RS20055at 876.243 kb on - strand, within ABZR87_RS20055at 876.243 kb on - strand, within ABZR87_RS20055at 876.243 kb on - strand, within ABZR87_RS20055at 876.243 kb on - strand, within ABZR87_RS20055at 876.397 kb on + strand, within ABZR87_RS20055at 876.397 kb on + strand, within ABZR87_RS20055at 876.825 kb on + strand, within ABZR87_RS20060at 876.825 kb on + strand, within ABZR87_RS20060at 876.825 kb on + strand, within ABZR87_RS20060at 876.826 kb on - strand, within ABZR87_RS20060at 876.968 kb on + strand, within ABZR87_RS20060at 876.968 kb on + strand, within ABZR87_RS20060at 876.969 kb on - strand, within ABZR87_RS20060at 877.186 kb on + strand, within ABZR87_RS20060at 877.186 kb on + strand, within ABZR87_RS20060at 877.186 kb on + strand, within ABZR87_RS20060at 877.187 kb on - strand, within ABZR87_RS20060at 877.187 kb on - strand, within ABZR87_RS20060at 877.187 kb on - strand, within ABZR87_RS20060at 877.233 kb on - strand, within ABZR87_RS20060at 877.233 kb on - strand, within ABZR87_RS20060at 877.256 kb on + strand, within ABZR87_RS20060at 877.256 kb on + strand, within ABZR87_RS20060at 877.257 kb on - strand, within ABZR87_RS20060at 877.257 kb on - strand, within ABZR87_RS20060at 877.257 kb on - strand, within ABZR87_RS20060at 877.289 kb on + strand, within ABZR87_RS20060at 877.289 kb on + strand, within ABZR87_RS20060at 877.289 kb on + strand, within ABZR87_RS20060at 877.289 kb on + strand, within ABZR87_RS20060at 877.289 kb on + strand, within ABZR87_RS20060at 877.290 kb on - strand, within ABZR87_RS20060at 877.290 kb on - strand, within ABZR87_RS20060at 877.325 kb on + strandat 877.325 kb on + strandat 877.326 kb on - strandat 877.326 kb on - strandat 877.394 kb on + strandat 877.441 kb on + strandat 877.442 kb on - strandat 877.442 kb on - strandat 877.772 kb on + strand, within ABZR87_RS20065at 877.792 kb on + strand, within ABZR87_RS20065at 877.792 kb on + strand, within ABZR87_RS20065at 877.793 kb on - strand, within ABZR87_RS20065at 877.793 kb on - strand, within ABZR87_RS20065at 877.804 kb on + strand, within ABZR87_RS20065at 877.804 kb on + strand, within ABZR87_RS20065at 877.804 kb on + strand, within ABZR87_RS20065at 877.805 kb on - strand, within ABZR87_RS20065at 877.805 kb on - strand, within ABZR87_RS20065at 877.813 kb on + strand, within ABZR87_RS20065at 877.813 kb on + strand, within ABZR87_RS20065at 877.813 kb on + strand, within ABZR87_RS20065at 877.814 kb on - strand, within ABZR87_RS20065at 877.814 kb on - strand, within ABZR87_RS20065at 877.936 kb on + strandat 877.936 kb on + strandat 877.936 kb on + strandat 877.936 kb on + strandat 877.937 kb on - strandat 877.937 kb on - strandat 877.937 kb on - strandat 877.937 kb on - strandat 877.937 kb on - strandat 877.937 kb on - strandat 877.937 kb on - strandat 877.937 kb on - strandat 877.937 kb on - strandat 877.937 kb on - strandat 878.026 kb on + strandat 878.026 kb on + strandat 878.026 kb on + strandat 878.027 kb on - strandat 878.027 kb on - strandat 878.027 kb on - strandat 878.027 kb on - strandat 878.027 kb on - strandat 878.103 kb on - strandat 878.103 kb on - strandat 878.195 kb on + strandat 878.195 kb on + strandat 878.195 kb on + strandat 878.195 kb on + strandat 878.195 kb on + strandat 878.196 kb on - strandat 878.196 kb on - strandat 878.196 kb on - strandat 878.196 kb on - strandat 878.197 kb on + strandat 878.198 kb on - strandat 878.209 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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875,594 + ABZR87_RS20050 0.58 -0.8
875,634 + ABZR87_RS20050 0.65 +0.6
875,635 - ABZR87_RS20050 0.65 +0.4
875,635 - ABZR87_RS20050 0.65 -2.0
875,635 - ABZR87_RS20050 0.65 +0.3
875,635 - ABZR87_RS20050 0.65 +2.0
875,639 - ABZR87_RS20050 0.66 +0.7
875,660 + ABZR87_RS20050 0.70 -0.5
875,660 + ABZR87_RS20050 0.70 +0.1
875,793 + -1.4
875,793 + -0.6
875,796 + +0.9
875,796 + -0.8
875,796 + +0.3
875,796 + -0.8
875,796 + -0.1
875,797 - +0.2
875,797 - -0.5
875,823 + +0.2
875,824 - +1.7
875,824 - +0.7
875,871 + -0.2
875,872 - +0.4
875,872 - -0.4
875,872 - -0.0
875,973 + ABZR87_RS20055 0.16 +1.5
875,973 + ABZR87_RS20055 0.16 +0.9
875,974 - ABZR87_RS20055 0.16 -0.0
876,242 + ABZR87_RS20055 0.57 +0.3
876,243 - ABZR87_RS20055 0.57 -0.1
876,243 - ABZR87_RS20055 0.57 -2.0
876,243 - ABZR87_RS20055 0.57 -0.1
876,243 - ABZR87_RS20055 0.57 +1.4
876,243 - ABZR87_RS20055 0.57 -1.6
876,397 + ABZR87_RS20055 0.81 +2.0
876,397 + ABZR87_RS20055 0.81 +0.6
876,825 + ABZR87_RS20060 0.31 +0.5
876,825 + ABZR87_RS20060 0.31 -1.7
876,825 + ABZR87_RS20060 0.31 -0.2
876,826 - ABZR87_RS20060 0.31 -0.7
876,968 + ABZR87_RS20060 0.48 -0.4
876,968 + ABZR87_RS20060 0.48 -0.0
876,969 - ABZR87_RS20060 0.48 +0.3
877,186 + ABZR87_RS20060 0.74 -1.8
877,186 + ABZR87_RS20060 0.74 -0.6
877,186 + ABZR87_RS20060 0.74 -0.2
877,187 - ABZR87_RS20060 0.74 +0.4
877,187 - ABZR87_RS20060 0.74 -0.4
877,187 - ABZR87_RS20060 0.74 +1.5
877,233 - ABZR87_RS20060 0.80 +0.0
877,233 - ABZR87_RS20060 0.80 -1.3
877,256 + ABZR87_RS20060 0.83 -0.4
877,256 + ABZR87_RS20060 0.83 +0.2
877,257 - ABZR87_RS20060 0.83 -0.5
877,257 - ABZR87_RS20060 0.83 -0.1
877,257 - ABZR87_RS20060 0.83 -1.4
877,289 + ABZR87_RS20060 0.87 -0.2
877,289 + ABZR87_RS20060 0.87 -1.0
877,289 + ABZR87_RS20060 0.87 -0.4
877,289 + ABZR87_RS20060 0.87 -1.1
877,289 + ABZR87_RS20060 0.87 +1.0
877,290 - ABZR87_RS20060 0.87 +0.5
877,290 - ABZR87_RS20060 0.87 +0.4
877,325 + -1.0
877,325 + +0.5
877,326 - -1.8
877,326 - -1.0
877,394 + +0.7
877,441 + +0.6
877,442 - -0.4
877,442 - -0.1
877,772 + ABZR87_RS20065 0.66 -2.5
877,792 + ABZR87_RS20065 0.70 -0.4
877,792 + ABZR87_RS20065 0.70 -0.5
877,793 - ABZR87_RS20065 0.70 +0.1
877,793 - ABZR87_RS20065 0.70 -0.1
877,804 + ABZR87_RS20065 0.73 -0.2
877,804 + ABZR87_RS20065 0.73 -0.6
877,804 + ABZR87_RS20065 0.73 -0.9
877,805 - ABZR87_RS20065 0.73 -1.3
877,805 - ABZR87_RS20065 0.73 -0.0
877,813 + ABZR87_RS20065 0.74 +0.4
877,813 + ABZR87_RS20065 0.74 -0.6
877,813 + ABZR87_RS20065 0.74 +0.2
877,814 - ABZR87_RS20065 0.75 +0.8
877,814 - ABZR87_RS20065 0.75 +0.7
877,936 + -0.4
877,936 + -0.0
877,936 + +1.0
877,936 + -0.4
877,937 - -0.0
877,937 - +0.5
877,937 - -2.4
877,937 - +0.4
877,937 - +0.5
877,937 - +0.0
877,937 - -0.3
877,937 - -0.3
877,937 - -1.1
877,937 - +0.6
878,026 + +0.9
878,026 + -0.4
878,026 + -3.2
878,027 - +0.6
878,027 - +0.9
878,027 - -0.7
878,027 - -1.0
878,027 - +0.2
878,103 - +0.4
878,103 - -0.6
878,195 + -1.1
878,195 + +0.3
878,195 + -1.1
878,195 + -0.2
878,195 + -0.0
878,196 - +0.2
878,196 - -0.0
878,196 - +0.8
878,196 - -0.4
878,197 + +0.2
878,198 - -0.1
878,209 - -0.2

Or see this region's nucleotide sequence