Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20050

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20040 and ABZR87_RS20045 are separated by 30 nucleotidesABZR87_RS20045 and ABZR87_RS20050 are separated by 19 nucleotidesABZR87_RS20050 and ABZR87_RS20055 are separated by 51 nucleotidesABZR87_RS20055 and ABZR87_RS20060 are separated by 38 nucleotides ABZR87_RS20040: ABZR87_RS20040 - BON domain-containing protein, at 874,228 to 874,875 _RS20040 ABZR87_RS20045: ABZR87_RS20045 - TraR/DksA family transcriptional regulator, at 874,906 to 875,268 _RS20045 ABZR87_RS20050: ABZR87_RS20050 - flavodoxin family protein, at 875,288 to 875,818 _RS20050 ABZR87_RS20055: ABZR87_RS20055 - BON domain-containing protein, at 875,870 to 876,523 _RS20055 ABZR87_RS20060: ABZR87_RS20060 - universal stress protein, at 876,562 to 877,401 _RS20060 Position (kb) 875 876Strain fitness (log2 ratio) -2 -1 0 1 2at 874.332 kb on + strand, within ABZR87_RS20040at 874.333 kb on - strand, within ABZR87_RS20040at 874.333 kb on - strand, within ABZR87_RS20040at 874.745 kb on + strand, within ABZR87_RS20040at 874.745 kb on + strand, within ABZR87_RS20040at 874.745 kb on + strand, within ABZR87_RS20040at 874.745 kb on + strand, within ABZR87_RS20040at 874.745 kb on + strand, within ABZR87_RS20040at 874.746 kb on - strand, within ABZR87_RS20040at 874.746 kb on - strand, within ABZR87_RS20040at 874.876 kb on - strandat 874.894 kb on - strandat 874.894 kb on - strandat 874.894 kb on - strandat 875.018 kb on + strand, within ABZR87_RS20045at 875.018 kb on + strand, within ABZR87_RS20045at 875.018 kb on + strand, within ABZR87_RS20045at 875.018 kb on + strand, within ABZR87_RS20045at 875.018 kb on + strand, within ABZR87_RS20045at 875.019 kb on - strand, within ABZR87_RS20045at 875.019 kb on - strand, within ABZR87_RS20045at 875.019 kb on - strand, within ABZR87_RS20045at 875.034 kb on + strand, within ABZR87_RS20045at 875.034 kb on + strand, within ABZR87_RS20045at 875.034 kb on + strand, within ABZR87_RS20045at 875.035 kb on - strand, within ABZR87_RS20045at 875.035 kb on - strand, within ABZR87_RS20045at 875.035 kb on - strand, within ABZR87_RS20045at 875.035 kb on - strand, within ABZR87_RS20045at 875.355 kb on - strand, within ABZR87_RS20050at 875.365 kb on + strand, within ABZR87_RS20050at 875.366 kb on - strand, within ABZR87_RS20050at 875.558 kb on - strand, within ABZR87_RS20050at 875.558 kb on - strand, within ABZR87_RS20050at 875.594 kb on + strand, within ABZR87_RS20050at 875.634 kb on + strand, within ABZR87_RS20050at 875.635 kb on - strand, within ABZR87_RS20050at 875.635 kb on - strand, within ABZR87_RS20050at 875.635 kb on - strand, within ABZR87_RS20050at 875.635 kb on - strand, within ABZR87_RS20050at 875.639 kb on - strand, within ABZR87_RS20050at 875.660 kb on + strand, within ABZR87_RS20050at 875.660 kb on + strand, within ABZR87_RS20050at 875.793 kb on + strandat 875.793 kb on + strandat 875.796 kb on + strandat 875.796 kb on + strandat 875.796 kb on + strandat 875.796 kb on + strandat 875.796 kb on + strandat 875.797 kb on - strandat 875.797 kb on - strandat 875.823 kb on + strandat 875.824 kb on - strandat 875.824 kb on - strandat 875.871 kb on + strandat 875.872 kb on - strandat 875.872 kb on - strandat 875.872 kb on - strandat 875.973 kb on + strand, within ABZR87_RS20055at 875.973 kb on + strand, within ABZR87_RS20055at 875.974 kb on - strand, within ABZR87_RS20055at 876.242 kb on + strand, within ABZR87_RS20055at 876.243 kb on - strand, within ABZR87_RS20055at 876.243 kb on - strand, within ABZR87_RS20055at 876.243 kb on - strand, within ABZR87_RS20055at 876.243 kb on - strand, within ABZR87_RS20055at 876.243 kb on - strand, within ABZR87_RS20055at 876.397 kb on + strand, within ABZR87_RS20055at 876.397 kb on + strand, within ABZR87_RS20055

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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874,332 + ABZR87_RS20040 0.16 +0.3
874,333 - ABZR87_RS20040 0.16 +1.0
874,333 - ABZR87_RS20040 0.16 -0.2
874,745 + ABZR87_RS20040 0.80 -0.7
874,745 + ABZR87_RS20040 0.80 +0.7
874,745 + ABZR87_RS20040 0.80 +0.5
874,745 + ABZR87_RS20040 0.80 +0.3
874,745 + ABZR87_RS20040 0.80 -1.4
874,746 - ABZR87_RS20040 0.80 +0.7
874,746 - ABZR87_RS20040 0.80 -0.3
874,876 - -0.3
874,894 - +1.0
874,894 - -0.4
874,894 - -1.7
875,018 + ABZR87_RS20045 0.31 -0.3
875,018 + ABZR87_RS20045 0.31 -0.7
875,018 + ABZR87_RS20045 0.31 +0.2
875,018 + ABZR87_RS20045 0.31 -0.6
875,018 + ABZR87_RS20045 0.31 -0.1
875,019 - ABZR87_RS20045 0.31 -0.2
875,019 - ABZR87_RS20045 0.31 -0.9
875,019 - ABZR87_RS20045 0.31 -0.9
875,034 + ABZR87_RS20045 0.35 +0.5
875,034 + ABZR87_RS20045 0.35 -1.1
875,034 + ABZR87_RS20045 0.35 -0.4
875,035 - ABZR87_RS20045 0.36 -0.5
875,035 - ABZR87_RS20045 0.36 -0.1
875,035 - ABZR87_RS20045 0.36 -1.7
875,035 - ABZR87_RS20045 0.36 -1.3
875,355 - ABZR87_RS20050 0.13 +0.1
875,365 + ABZR87_RS20050 0.15 +0.5
875,366 - ABZR87_RS20050 0.15 +0.8
875,558 - ABZR87_RS20050 0.51 -0.3
875,558 - ABZR87_RS20050 0.51 -0.4
875,594 + ABZR87_RS20050 0.58 -0.8
875,634 + ABZR87_RS20050 0.65 +0.6
875,635 - ABZR87_RS20050 0.65 +0.4
875,635 - ABZR87_RS20050 0.65 -2.0
875,635 - ABZR87_RS20050 0.65 +0.3
875,635 - ABZR87_RS20050 0.65 +2.0
875,639 - ABZR87_RS20050 0.66 +0.7
875,660 + ABZR87_RS20050 0.70 -0.5
875,660 + ABZR87_RS20050 0.70 +0.1
875,793 + -1.4
875,793 + -0.6
875,796 + +0.9
875,796 + -0.8
875,796 + +0.3
875,796 + -0.8
875,796 + -0.1
875,797 - +0.2
875,797 - -0.5
875,823 + +0.2
875,824 - +1.7
875,824 - +0.7
875,871 + -0.2
875,872 - +0.4
875,872 - -0.4
875,872 - -0.0
875,973 + ABZR87_RS20055 0.16 +1.5
875,973 + ABZR87_RS20055 0.16 +0.9
875,974 - ABZR87_RS20055 0.16 -0.0
876,242 + ABZR87_RS20055 0.57 +0.3
876,243 - ABZR87_RS20055 0.57 -0.1
876,243 - ABZR87_RS20055 0.57 -2.0
876,243 - ABZR87_RS20055 0.57 -0.1
876,243 - ABZR87_RS20055 0.57 +1.4
876,243 - ABZR87_RS20055 0.57 -1.6
876,397 + ABZR87_RS20055 0.81 +2.0
876,397 + ABZR87_RS20055 0.81 +0.6

Or see this region's nucleotide sequence