Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20020 and ABZR87_RS20025 are separated by 173 nucleotides ABZR87_RS20025 and ABZR87_RS20030 overlap by 4 nucleotides
ABZR87_RS20020: ABZR87_RS20020 - magnesium-translocating P-type ATPase, at 868,333 to 870,939
_RS20020
ABZR87_RS20025: ABZR87_RS20025 - response regulator transcription factor, at 871,113 to 871,760
_RS20025
ABZR87_RS20030: ABZR87_RS20030 - PAS domain-containing sensor histidine kinase, at 871,757 to 873,145
_RS20030
Position (kb) 871
872 Strain fitness (log2 ratio) -2
-1
0
1 at 870.120 kb on + strand, within ABZR87_RS20020 at 870.120 kb on + strand, within ABZR87_RS20020 at 870.168 kb on + strand, within ABZR87_RS20020 at 870.168 kb on + strand, within ABZR87_RS20020 at 870.201 kb on - strand, within ABZR87_RS20020 at 870.273 kb on - strand, within ABZR87_RS20020 at 870.310 kb on - strand, within ABZR87_RS20020 at 870.339 kb on + strand, within ABZR87_RS20020 at 870.791 kb on + strand at 870.978 kb on + strand at 870.979 kb on - strand at 870.979 kb on - strand at 871.114 kb on + strand at 871.114 kb on + strand at 871.115 kb on - strand at 871.115 kb on - strand at 871.115 kb on - strand at 871.121 kb on + strand at 871.121 kb on + strand at 871.122 kb on - strand at 871.150 kb on - strand at 871.150 kb on - strand at 871.213 kb on + strand, within ABZR87_RS20025 at 871.213 kb on + strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.214 kb on - strand, within ABZR87_RS20025 at 871.291 kb on + strand, within ABZR87_RS20025 at 871.292 kb on - strand, within ABZR87_RS20025 at 871.390 kb on + strand, within ABZR87_RS20025 at 871.390 kb on + strand, within ABZR87_RS20025 at 871.390 kb on + strand, within ABZR87_RS20025 at 871.391 kb on - strand, within ABZR87_RS20025 at 871.391 kb on - strand, within ABZR87_RS20025 at 871.391 kb on - strand, within ABZR87_RS20025 at 871.391 kb on - strand, within ABZR87_RS20025 at 871.391 kb on - strand, within ABZR87_RS20025 at 871.460 kb on - strand, within ABZR87_RS20025 at 871.460 kb on - strand, within ABZR87_RS20025 at 871.495 kb on + strand, within ABZR87_RS20025 at 871.495 kb on + strand, within ABZR87_RS20025 at 871.495 kb on + strand, within ABZR87_RS20025 at 871.495 kb on + strand, within ABZR87_RS20025 at 871.496 kb on - strand, within ABZR87_RS20025 at 871.496 kb on - strand, within ABZR87_RS20025 at 871.496 kb on - strand, within ABZR87_RS20025 at 871.496 kb on - strand, within ABZR87_RS20025 at 871.496 kb on - strand, within ABZR87_RS20025 at 871.802 kb on + strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.818 kb on - strand at 872.005 kb on + strand, within ABZR87_RS20030 at 872.006 kb on - strand, within ABZR87_RS20030 at 872.155 kb on + strand, within ABZR87_RS20030 at 872.155 kb on + strand, within ABZR87_RS20030 at 872.184 kb on - strand, within ABZR87_RS20030 at 872.569 kb on + strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.678 kb on - strand, within ABZR87_RS20030
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 870,120 + ABZR87_RS20020 0.69 +0.6 870,120 + ABZR87_RS20020 0.69 -0.8 870,168 + ABZR87_RS20020 0.70 +0.2 870,168 + ABZR87_RS20020 0.70 +0.1 870,201 - ABZR87_RS20020 0.72 -0.1 870,273 - ABZR87_RS20020 0.74 -1.7 870,310 - ABZR87_RS20020 0.76 -1.3 870,339 + ABZR87_RS20020 0.77 -0.1 870,791 + +1.6 870,978 + -0.5 870,979 - -0.5 870,979 - -0.5 871,114 + -0.5 871,114 + +0.6 871,115 - +0.7 871,115 - +1.0 871,115 - -1.0 871,121 + +0.4 871,121 + +1.0 871,122 - -0.9 871,150 - +0.7 871,150 - -1.0 871,213 + ABZR87_RS20025 0.15 +0.1 871,213 + ABZR87_RS20025 0.15 -0.7 871,214 - ABZR87_RS20025 0.16 -0.1 871,214 - ABZR87_RS20025 0.16 +1.0 871,214 - ABZR87_RS20025 0.16 -0.9 871,214 - ABZR87_RS20025 0.16 -0.0 871,214 - ABZR87_RS20025 0.16 +0.0 871,214 - ABZR87_RS20025 0.16 -0.5 871,214 - ABZR87_RS20025 0.16 +0.4 871,291 + ABZR87_RS20025 0.27 +0.2 871,292 - ABZR87_RS20025 0.28 -1.3 871,390 + ABZR87_RS20025 0.43 -0.4 871,390 + ABZR87_RS20025 0.43 -0.3 871,390 + ABZR87_RS20025 0.43 +1.1 871,391 - ABZR87_RS20025 0.43 -1.7 871,391 - ABZR87_RS20025 0.43 -0.5 871,391 - ABZR87_RS20025 0.43 -0.9 871,391 - ABZR87_RS20025 0.43 -0.7 871,391 - ABZR87_RS20025 0.43 -0.6 871,460 - ABZR87_RS20025 0.54 -0.8 871,460 - ABZR87_RS20025 0.54 -0.3 871,495 + ABZR87_RS20025 0.59 -0.4 871,495 + ABZR87_RS20025 0.59 -0.2 871,495 + ABZR87_RS20025 0.59 -1.8 871,495 + ABZR87_RS20025 0.59 -0.2 871,496 - ABZR87_RS20025 0.59 -1.3 871,496 - ABZR87_RS20025 0.59 -1.9 871,496 - ABZR87_RS20025 0.59 -0.6 871,496 - ABZR87_RS20025 0.59 +0.7 871,496 - ABZR87_RS20025 0.59 -0.1 871,802 + +0.2 871,803 - +0.2 871,803 - +0.8 871,803 - -0.5 871,803 - +0.2 871,818 - +0.2 872,005 + ABZR87_RS20030 0.18 -0.3 872,006 - ABZR87_RS20030 0.18 +0.5 872,155 + ABZR87_RS20030 0.29 -0.7 872,155 + ABZR87_RS20030 0.29 -0.9 872,184 - ABZR87_RS20030 0.31 -0.0 872,569 + ABZR87_RS20030 0.58 +0.2 872,570 - ABZR87_RS20030 0.59 -0.0 872,570 - ABZR87_RS20030 0.59 +0.0 872,570 - ABZR87_RS20030 0.59 -0.1 872,570 - ABZR87_RS20030 0.59 -0.9 872,677 + ABZR87_RS20030 0.66 +0.3 872,677 + ABZR87_RS20030 0.66 -0.7 872,677 + ABZR87_RS20030 0.66 -0.4 872,678 - ABZR87_RS20030 0.66 +0.5
Or see this region's nucleotide sequence