Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19885 and ABZR87_RS19890 overlap by 4 nucleotides ABZR87_RS19890 and ABZR87_RS19895 overlap by 37 nucleotides
ABZR87_RS19885: ABZR87_RS19885 - efflux transporter outer membrane subunit, at 836,330 to 837,844
_RS19885
ABZR87_RS19890: ABZR87_RS19890 - efflux RND transporter periplasmic adaptor subunit, at 837,841 to 838,914
_RS19890
ABZR87_RS19895: ABZR87_RS19895 - ribosome-associated ATPase/putative transporter RbbA, at 838,878 to 841,694
_RS19895
Position (kb) 837
838
839 Strain fitness (log2 ratio) -1
0
1
2
3 at 836.900 kb on + strand, within ABZR87_RS19885 at 836.900 kb on + strand, within ABZR87_RS19885 at 836.900 kb on + strand, within ABZR87_RS19885 at 836.901 kb on - strand, within ABZR87_RS19885 at 836.901 kb on - strand, within ABZR87_RS19885 at 836.953 kb on - strand, within ABZR87_RS19885 at 836.953 kb on - strand, within ABZR87_RS19885 at 837.075 kb on + strand, within ABZR87_RS19885 at 837.075 kb on + strand, within ABZR87_RS19885 at 837.075 kb on + strand, within ABZR87_RS19885 at 837.076 kb on - strand, within ABZR87_RS19885 at 837.324 kb on - strand, within ABZR87_RS19885 at 837.492 kb on + strand, within ABZR87_RS19885 at 837.492 kb on + strand, within ABZR87_RS19885 at 837.492 kb on + strand, within ABZR87_RS19885 at 837.492 kb on + strand, within ABZR87_RS19885 at 837.492 kb on + strand, within ABZR87_RS19885 at 837.493 kb on - strand, within ABZR87_RS19885 at 837.493 kb on - strand, within ABZR87_RS19885 at 837.493 kb on - strand, within ABZR87_RS19885 at 837.493 kb on - strand, within ABZR87_RS19885 at 837.493 kb on - strand, within ABZR87_RS19885 at 837.493 kb on - strand, within ABZR87_RS19885 at 837.493 kb on - strand, within ABZR87_RS19885 at 837.493 kb on - strand, within ABZR87_RS19885 at 837.493 kb on - strand, within ABZR87_RS19885 at 837.493 kb on - strand, within ABZR87_RS19885 at 837.734 kb on + strand at 837.735 kb on - strand at 837.735 kb on - strand at 837.735 kb on - strand at 838.388 kb on + strand, within ABZR87_RS19890 at 838.388 kb on + strand, within ABZR87_RS19890 at 838.389 kb on - strand, within ABZR87_RS19890 at 838.401 kb on + strand, within ABZR87_RS19890 at 838.401 kb on + strand, within ABZR87_RS19890 at 838.402 kb on - strand, within ABZR87_RS19890 at 838.452 kb on - strand, within ABZR87_RS19890 at 838.452 kb on - strand, within ABZR87_RS19890 at 838.591 kb on + strand, within ABZR87_RS19890 at 838.591 kb on + strand, within ABZR87_RS19890 at 838.591 kb on + strand, within ABZR87_RS19890 at 838.592 kb on - strand, within ABZR87_RS19890 at 838.592 kb on - strand, within ABZR87_RS19890 at 838.678 kb on + strand, within ABZR87_RS19890 at 838.678 kb on + strand, within ABZR87_RS19890 at 838.678 kb on + strand, within ABZR87_RS19890 at 838.678 kb on + strand, within ABZR87_RS19890 at 838.678 kb on + strand, within ABZR87_RS19890 at 838.679 kb on - strand, within ABZR87_RS19890 at 838.679 kb on - strand, within ABZR87_RS19890 at 838.679 kb on - strand, within ABZR87_RS19890 at 838.679 kb on - strand, within ABZR87_RS19890 at 838.679 kb on - strand, within ABZR87_RS19890 at 838.679 kb on - strand, within ABZR87_RS19890 at 839.202 kb on + strand, within ABZR87_RS19895 at 839.202 kb on + strand, within ABZR87_RS19895 at 839.203 kb on - strand, within ABZR87_RS19895 at 839.203 kb on - strand, within ABZR87_RS19895 at 839.203 kb on - strand, within ABZR87_RS19895 at 839.232 kb on + strand, within ABZR87_RS19895 at 839.232 kb on + strand, within ABZR87_RS19895 at 839.233 kb on - strand, within ABZR87_RS19895 at 839.508 kb on - strand, within ABZR87_RS19895 at 839.508 kb on - strand, within ABZR87_RS19895 at 839.553 kb on + strand, within ABZR87_RS19895 at 839.554 kb on - strand, within ABZR87_RS19895
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 836,900 + ABZR87_RS19885 0.38 +0.0 836,900 + ABZR87_RS19885 0.38 +1.3 836,900 + ABZR87_RS19885 0.38 -0.4 836,901 - ABZR87_RS19885 0.38 -1.1 836,901 - ABZR87_RS19885 0.38 -1.1 836,953 - ABZR87_RS19885 0.41 +0.1 836,953 - ABZR87_RS19885 0.41 -0.3 837,075 + ABZR87_RS19885 0.49 +0.7 837,075 + ABZR87_RS19885 0.49 +1.0 837,075 + ABZR87_RS19885 0.49 +0.3 837,076 - ABZR87_RS19885 0.49 +1.1 837,324 - ABZR87_RS19885 0.66 +0.8 837,492 + ABZR87_RS19885 0.77 +0.5 837,492 + ABZR87_RS19885 0.77 -0.3 837,492 + ABZR87_RS19885 0.77 -0.7 837,492 + ABZR87_RS19885 0.77 -0.3 837,492 + ABZR87_RS19885 0.77 -0.1 837,493 - ABZR87_RS19885 0.77 -0.7 837,493 - ABZR87_RS19885 0.77 +0.3 837,493 - ABZR87_RS19885 0.77 +0.6 837,493 - ABZR87_RS19885 0.77 -1.0 837,493 - ABZR87_RS19885 0.77 +0.5 837,493 - ABZR87_RS19885 0.77 -0.3 837,493 - ABZR87_RS19885 0.77 -1.1 837,493 - ABZR87_RS19885 0.77 -0.1 837,493 - ABZR87_RS19885 0.77 +0.2 837,493 - ABZR87_RS19885 0.77 -0.8 837,734 + -1.1 837,735 - -0.3 837,735 - -0.5 837,735 - -0.4 838,388 + ABZR87_RS19890 0.51 +0.5 838,388 + ABZR87_RS19890 0.51 +3.0 838,389 - ABZR87_RS19890 0.51 +0.5 838,401 + ABZR87_RS19890 0.52 +0.8 838,401 + ABZR87_RS19890 0.52 +0.9 838,402 - ABZR87_RS19890 0.52 -0.5 838,452 - ABZR87_RS19890 0.57 +0.5 838,452 - ABZR87_RS19890 0.57 +0.6 838,591 + ABZR87_RS19890 0.70 +1.4 838,591 + ABZR87_RS19890 0.70 -0.3 838,591 + ABZR87_RS19890 0.70 -0.7 838,592 - ABZR87_RS19890 0.70 +0.2 838,592 - ABZR87_RS19890 0.70 +0.4 838,678 + ABZR87_RS19890 0.78 +0.6 838,678 + ABZR87_RS19890 0.78 +0.9 838,678 + ABZR87_RS19890 0.78 -1.3 838,678 + ABZR87_RS19890 0.78 +1.5 838,678 + ABZR87_RS19890 0.78 +0.8 838,679 - ABZR87_RS19890 0.78 -0.6 838,679 - ABZR87_RS19890 0.78 -0.6 838,679 - ABZR87_RS19890 0.78 +0.2 838,679 - ABZR87_RS19890 0.78 -0.4 838,679 - ABZR87_RS19890 0.78 -0.1 838,679 - ABZR87_RS19890 0.78 +0.0 839,202 + ABZR87_RS19895 0.12 +1.2 839,202 + ABZR87_RS19895 0.12 -0.2 839,203 - ABZR87_RS19895 0.12 -0.0 839,203 - ABZR87_RS19895 0.12 +0.3 839,203 - ABZR87_RS19895 0.12 +0.4 839,232 + ABZR87_RS19895 0.13 -1.0 839,232 + ABZR87_RS19895 0.13 -0.7 839,233 - ABZR87_RS19895 0.13 +0.0 839,508 - ABZR87_RS19895 0.22 +0.5 839,508 - ABZR87_RS19895 0.22 -0.5 839,553 + ABZR87_RS19895 0.24 +0.4 839,554 - ABZR87_RS19895 0.24 +0.7
Or see this region's nucleotide sequence