Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19720

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19715 and ABZR87_RS19720 are separated by 2 nucleotidesABZR87_RS19720 and ABZR87_RS19725 are separated by 4 nucleotides ABZR87_RS19715: ABZR87_RS19715 - CusA/CzcA family heavy metal efflux RND transporter, at 798,461 to 801,556 _RS19715 ABZR87_RS19720: ABZR87_RS19720 - efflux RND transporter periplasmic adaptor subunit, at 801,559 to 802,707 _RS19720 ABZR87_RS19725: ABZR87_RS19725 - TolC family protein, at 802,712 to 803,965 _RS19725 Position (kb) 801 802 803Strain fitness (log2 ratio) -3 -2 -1 0 1at 800.595 kb on + strand, within ABZR87_RS19715at 800.595 kb on + strand, within ABZR87_RS19715at 800.595 kb on + strand, within ABZR87_RS19715at 800.595 kb on + strand, within ABZR87_RS19715at 800.596 kb on - strand, within ABZR87_RS19715at 800.596 kb on - strand, within ABZR87_RS19715at 800.596 kb on - strand, within ABZR87_RS19715at 800.739 kb on + strand, within ABZR87_RS19715at 800.739 kb on + strand, within ABZR87_RS19715at 800.739 kb on + strand, within ABZR87_RS19715at 800.739 kb on + strand, within ABZR87_RS19715at 800.739 kb on + strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.973 kb on + strand, within ABZR87_RS19715at 800.974 kb on - strand, within ABZR87_RS19715at 801.010 kb on - strand, within ABZR87_RS19715at 801.010 kb on - strand, within ABZR87_RS19715at 801.010 kb on - strand, within ABZR87_RS19715at 801.084 kb on + strand, within ABZR87_RS19715at 801.084 kb on + strand, within ABZR87_RS19715at 801.085 kb on - strand, within ABZR87_RS19715at 801.085 kb on - strand, within ABZR87_RS19715at 801.219 kb on + strand, within ABZR87_RS19715at 801.219 kb on + strand, within ABZR87_RS19715at 801.220 kb on - strand, within ABZR87_RS19715at 801.220 kb on - strand, within ABZR87_RS19715at 801.250 kb on + strandat 801.251 kb on - strandat 801.251 kb on - strandat 801.442 kb on - strandat 801.560 kb on + strandat 801.560 kb on + strandat 801.560 kb on + strandat 801.560 kb on + strandat 801.608 kb on - strandat 801.731 kb on + strand, within ABZR87_RS19720at 801.812 kb on + strand, within ABZR87_RS19720at 801.812 kb on + strand, within ABZR87_RS19720at 801.812 kb on + strand, within ABZR87_RS19720at 801.813 kb on - strand, within ABZR87_RS19720at 801.813 kb on - strand, within ABZR87_RS19720at 801.813 kb on - strand, within ABZR87_RS19720at 801.860 kb on - strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.996 kb on - strand, within ABZR87_RS19720at 801.996 kb on - strand, within ABZR87_RS19720at 802.292 kb on + strand, within ABZR87_RS19720at 802.325 kb on + strand, within ABZR87_RS19720at 802.325 kb on + strand, within ABZR87_RS19720at 802.437 kb on - strand, within ABZR87_RS19720at 802.437 kb on - strand, within ABZR87_RS19720at 802.713 kb on + strandat 802.713 kb on + strandat 802.714 kb on - strandat 802.866 kb on + strand, within ABZR87_RS19725at 802.866 kb on + strand, within ABZR87_RS19725at 802.866 kb on + strand, within ABZR87_RS19725at 802.866 kb on + strand, within ABZR87_RS19725at 802.866 kb on + strand, within ABZR87_RS19725at 802.866 kb on - strand, within ABZR87_RS19725at 802.867 kb on - strand, within ABZR87_RS19725at 802.867 kb on - strand, within ABZR87_RS19725at 802.962 kb on + strand, within ABZR87_RS19725at 802.962 kb on + strand, within ABZR87_RS19725at 802.963 kb on - strand, within ABZR87_RS19725at 802.963 kb on - strand, within ABZR87_RS19725at 802.963 kb on - strand, within ABZR87_RS19725at 802.982 kb on + strand, within ABZR87_RS19725at 803.181 kb on + strand, within ABZR87_RS19725at 803.181 kb on + strand, within ABZR87_RS19725at 803.182 kb on - strand, within ABZR87_RS19725at 803.182 kb on - strand, within ABZR87_RS19725at 803.182 kb on - strand, within ABZR87_RS19725at 803.182 kb on - strand, within ABZR87_RS19725at 803.464 kb on - strand, within ABZR87_RS19725at 803.464 kb on - strand, within ABZR87_RS19725at 803.540 kb on + strand, within ABZR87_RS19725at 803.540 kb on + strand, within ABZR87_RS19725at 803.541 kb on - strand, within ABZR87_RS19725at 803.541 kb on - strand, within ABZR87_RS19725at 803.574 kb on + strand, within ABZR87_RS19725at 803.575 kb on - strand, within ABZR87_RS19725at 803.575 kb on - strand, within ABZR87_RS19725at 803.575 kb on - strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.577 kb on + strand, within ABZR87_RS19725at 803.578 kb on - strand, within ABZR87_RS19725at 803.578 kb on - strand, within ABZR87_RS19725at 803.578 kb on - strand, within ABZR87_RS19725at 803.599 kb on - strand, within ABZR87_RS19725at 803.611 kb on - strand, within ABZR87_RS19725

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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800,595 + ABZR87_RS19715 0.69 +0.1
800,595 + ABZR87_RS19715 0.69 -0.5
800,595 + ABZR87_RS19715 0.69 -0.7
800,595 + ABZR87_RS19715 0.69 -0.7
800,596 - ABZR87_RS19715 0.69 -1.2
800,596 - ABZR87_RS19715 0.69 -1.8
800,596 - ABZR87_RS19715 0.69 -0.5
800,739 + ABZR87_RS19715 0.74 -0.3
800,739 + ABZR87_RS19715 0.74 -0.7
800,739 + ABZR87_RS19715 0.74 -0.2
800,739 + ABZR87_RS19715 0.74 -0.4
800,739 + ABZR87_RS19715 0.74 -1.3
800,740 - ABZR87_RS19715 0.74 -2.3
800,740 - ABZR87_RS19715 0.74 +0.2
800,740 - ABZR87_RS19715 0.74 -0.2
800,740 - ABZR87_RS19715 0.74 -0.8
800,740 - ABZR87_RS19715 0.74 -1.0
800,740 - ABZR87_RS19715 0.74 -1.1
800,740 - ABZR87_RS19715 0.74 +0.0
800,740 - ABZR87_RS19715 0.74 -0.2
800,740 - ABZR87_RS19715 0.74 -0.5
800,740 - ABZR87_RS19715 0.74 -1.5
800,973 + ABZR87_RS19715 0.81 +0.2
800,974 - ABZR87_RS19715 0.81 -3.1
801,010 - ABZR87_RS19715 0.82 -0.1
801,010 - ABZR87_RS19715 0.82 -1.0
801,010 - ABZR87_RS19715 0.82 -0.5
801,084 + ABZR87_RS19715 0.85 -0.6
801,084 + ABZR87_RS19715 0.85 -1.9
801,085 - ABZR87_RS19715 0.85 +0.2
801,085 - ABZR87_RS19715 0.85 -0.8
801,219 + ABZR87_RS19715 0.89 -0.9
801,219 + ABZR87_RS19715 0.89 -0.7
801,220 - ABZR87_RS19715 0.89 -1.5
801,220 - ABZR87_RS19715 0.89 -2.3
801,250 + -2.3
801,251 - -0.0
801,251 - -0.3
801,442 - -2.6
801,560 + +0.9
801,560 + +0.4
801,560 + -0.1
801,560 + -0.2
801,608 - -1.2
801,731 + ABZR87_RS19720 0.15 +0.1
801,812 + ABZR87_RS19720 0.22 +0.0
801,812 + ABZR87_RS19720 0.22 -1.4
801,812 + ABZR87_RS19720 0.22 -1.0
801,813 - ABZR87_RS19720 0.22 -0.7
801,813 - ABZR87_RS19720 0.22 -1.5
801,813 - ABZR87_RS19720 0.22 +0.4
801,860 - ABZR87_RS19720 0.26 -0.4
801,995 + ABZR87_RS19720 0.38 +0.4
801,995 + ABZR87_RS19720 0.38 -1.1
801,995 + ABZR87_RS19720 0.38 -2.5
801,995 + ABZR87_RS19720 0.38 -1.8
801,996 - ABZR87_RS19720 0.38 -1.4
801,996 - ABZR87_RS19720 0.38 -0.1
802,292 + ABZR87_RS19720 0.64 -1.3
802,325 + ABZR87_RS19720 0.67 -0.4
802,325 + ABZR87_RS19720 0.67 +0.7
802,437 - ABZR87_RS19720 0.76 -1.5
802,437 - ABZR87_RS19720 0.76 -1.9
802,713 + -0.2
802,713 + -0.2
802,714 - -1.1
802,866 + ABZR87_RS19725 0.12 -1.0
802,866 + ABZR87_RS19725 0.12 -1.5
802,866 + ABZR87_RS19725 0.12 +0.5
802,866 + ABZR87_RS19725 0.12 -1.3
802,866 + ABZR87_RS19725 0.12 -0.1
802,866 - ABZR87_RS19725 0.12 -0.5
802,867 - ABZR87_RS19725 0.12 -1.8
802,867 - ABZR87_RS19725 0.12 -2.1
802,962 + ABZR87_RS19725 0.20 -0.9
802,962 + ABZR87_RS19725 0.20 -1.7
802,963 - ABZR87_RS19725 0.20 -0.7
802,963 - ABZR87_RS19725 0.20 +0.1
802,963 - ABZR87_RS19725 0.20 -0.3
802,982 + ABZR87_RS19725 0.22 +0.3
803,181 + ABZR87_RS19725 0.37 -0.2
803,181 + ABZR87_RS19725 0.37 -0.4
803,182 - ABZR87_RS19725 0.37 -0.4
803,182 - ABZR87_RS19725 0.37 +1.4
803,182 - ABZR87_RS19725 0.37 -0.8
803,182 - ABZR87_RS19725 0.37 -1.3
803,464 - ABZR87_RS19725 0.60 -1.8
803,464 - ABZR87_RS19725 0.60 -1.7
803,540 + ABZR87_RS19725 0.66 -0.4
803,540 + ABZR87_RS19725 0.66 -1.3
803,541 - ABZR87_RS19725 0.66 -0.1
803,541 - ABZR87_RS19725 0.66 +0.2
803,574 + ABZR87_RS19725 0.69 -2.6
803,575 - ABZR87_RS19725 0.69 -1.7
803,575 - ABZR87_RS19725 0.69 -0.1
803,575 - ABZR87_RS19725 0.69 -1.0
803,577 + ABZR87_RS19725 0.69 -0.3
803,577 + ABZR87_RS19725 0.69 -0.8
803,577 + ABZR87_RS19725 0.69 -1.3
803,577 + ABZR87_RS19725 0.69 +0.8
803,577 + ABZR87_RS19725 0.69 -1.7
803,577 + ABZR87_RS19725 0.69 -0.6
803,577 + ABZR87_RS19725 0.69 -0.3
803,578 - ABZR87_RS19725 0.69 -1.1
803,578 - ABZR87_RS19725 0.69 -0.3
803,578 - ABZR87_RS19725 0.69 -0.9
803,599 - ABZR87_RS19725 0.71 +0.6
803,611 - ABZR87_RS19725 0.72 +0.6

Or see this region's nucleotide sequence