Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19715

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19705 and ABZR87_RS19710 overlap by 18 nucleotidesABZR87_RS19710 and ABZR87_RS19715 are separated by 153 nucleotidesABZR87_RS19715 and ABZR87_RS19720 are separated by 2 nucleotides ABZR87_RS19705: ABZR87_RS19705 - APC family permease, at 796,529 to 797,911 _RS19705 ABZR87_RS19710: ABZR87_RS19710 - Hpt domain-containing protein, at 797,894 to 798,307 _RS19710 ABZR87_RS19715: ABZR87_RS19715 - CusA/CzcA family heavy metal efflux RND transporter, at 798,461 to 801,556 _RS19715 ABZR87_RS19720: ABZR87_RS19720 - efflux RND transporter periplasmic adaptor subunit, at 801,559 to 802,707 _RS19720 Position (kb) 798 799 800 801 802Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 797.462 kb on + strand, within ABZR87_RS19705at 797.462 kb on + strand, within ABZR87_RS19705at 797.463 kb on + strand, within ABZR87_RS19705at 797.463 kb on - strand, within ABZR87_RS19705at 797.498 kb on + strand, within ABZR87_RS19705at 797.498 kb on + strand, within ABZR87_RS19705at 797.654 kb on + strand, within ABZR87_RS19705at 797.654 kb on + strand, within ABZR87_RS19705at 797.654 kb on + strand, within ABZR87_RS19705at 797.654 kb on + strand, within ABZR87_RS19705at 797.655 kb on - strand, within ABZR87_RS19705at 797.655 kb on - strand, within ABZR87_RS19705at 797.715 kb on + strand, within ABZR87_RS19705at 797.783 kb on + strandat 797.783 kb on + strandat 798.274 kb on + strandat 798.765 kb on + strandat 798.765 kb on + strandat 798.765 kb on + strandat 798.766 kb on - strandat 798.766 kb on - strandat 798.942 kb on + strand, within ABZR87_RS19715at 799.044 kb on + strand, within ABZR87_RS19715at 799.045 kb on - strand, within ABZR87_RS19715at 799.061 kb on + strand, within ABZR87_RS19715at 799.062 kb on - strand, within ABZR87_RS19715at 799.062 kb on - strand, within ABZR87_RS19715at 799.062 kb on - strand, within ABZR87_RS19715at 799.143 kb on + strand, within ABZR87_RS19715at 799.143 kb on + strand, within ABZR87_RS19715at 799.144 kb on - strand, within ABZR87_RS19715at 799.266 kb on + strand, within ABZR87_RS19715at 799.267 kb on - strand, within ABZR87_RS19715at 799.359 kb on + strand, within ABZR87_RS19715at 799.360 kb on - strand, within ABZR87_RS19715at 799.360 kb on - strand, within ABZR87_RS19715at 799.510 kb on - strand, within ABZR87_RS19715at 799.611 kb on + strand, within ABZR87_RS19715at 799.612 kb on - strand, within ABZR87_RS19715at 799.612 kb on - strand, within ABZR87_RS19715at 799.612 kb on - strand, within ABZR87_RS19715at 799.612 kb on - strand, within ABZR87_RS19715at 799.626 kb on + strand, within ABZR87_RS19715at 799.657 kb on + strand, within ABZR87_RS19715at 799.657 kb on + strand, within ABZR87_RS19715at 799.657 kb on + strand, within ABZR87_RS19715at 799.657 kb on + strand, within ABZR87_RS19715at 799.657 kb on + strand, within ABZR87_RS19715at 799.657 kb on + strand, within ABZR87_RS19715at 799.657 kb on + strand, within ABZR87_RS19715at 799.658 kb on - strand, within ABZR87_RS19715at 799.658 kb on - strand, within ABZR87_RS19715at 799.658 kb on - strand, within ABZR87_RS19715at 799.658 kb on - strand, within ABZR87_RS19715at 799.661 kb on + strand, within ABZR87_RS19715at 799.662 kb on - strand, within ABZR87_RS19715at 799.662 kb on - strand, within ABZR87_RS19715at 799.662 kb on - strand, within ABZR87_RS19715at 799.722 kb on + strand, within ABZR87_RS19715at 799.723 kb on - strand, within ABZR87_RS19715at 799.723 kb on - strand, within ABZR87_RS19715at 799.723 kb on - strand, within ABZR87_RS19715at 799.723 kb on - strand, within ABZR87_RS19715at 799.723 kb on - strand, within ABZR87_RS19715at 799.825 kb on - strand, within ABZR87_RS19715at 799.873 kb on + strand, within ABZR87_RS19715at 799.874 kb on - strand, within ABZR87_RS19715at 799.874 kb on - strand, within ABZR87_RS19715at 799.874 kb on - strand, within ABZR87_RS19715at 799.874 kb on - strand, within ABZR87_RS19715at 799.886 kb on - strand, within ABZR87_RS19715at 799.953 kb on + strand, within ABZR87_RS19715at 799.953 kb on + strand, within ABZR87_RS19715at 800.034 kb on + strand, within ABZR87_RS19715at 800.035 kb on - strand, within ABZR87_RS19715at 800.035 kb on - strand, within ABZR87_RS19715at 800.595 kb on + strand, within ABZR87_RS19715at 800.595 kb on + strand, within ABZR87_RS19715at 800.595 kb on + strand, within ABZR87_RS19715at 800.595 kb on + strand, within ABZR87_RS19715at 800.596 kb on - strand, within ABZR87_RS19715at 800.596 kb on - strand, within ABZR87_RS19715at 800.596 kb on - strand, within ABZR87_RS19715at 800.739 kb on + strand, within ABZR87_RS19715at 800.739 kb on + strand, within ABZR87_RS19715at 800.739 kb on + strand, within ABZR87_RS19715at 800.739 kb on + strand, within ABZR87_RS19715at 800.739 kb on + strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.740 kb on - strand, within ABZR87_RS19715at 800.973 kb on + strand, within ABZR87_RS19715at 800.974 kb on - strand, within ABZR87_RS19715at 801.010 kb on - strand, within ABZR87_RS19715at 801.010 kb on - strand, within ABZR87_RS19715at 801.010 kb on - strand, within ABZR87_RS19715at 801.084 kb on + strand, within ABZR87_RS19715at 801.084 kb on + strand, within ABZR87_RS19715at 801.085 kb on - strand, within ABZR87_RS19715at 801.085 kb on - strand, within ABZR87_RS19715at 801.219 kb on + strand, within ABZR87_RS19715at 801.219 kb on + strand, within ABZR87_RS19715at 801.220 kb on - strand, within ABZR87_RS19715at 801.220 kb on - strand, within ABZR87_RS19715at 801.250 kb on + strandat 801.251 kb on - strandat 801.251 kb on - strandat 801.442 kb on - strandat 801.560 kb on + strandat 801.560 kb on + strandat 801.560 kb on + strandat 801.560 kb on + strandat 801.608 kb on - strandat 801.731 kb on + strand, within ABZR87_RS19720at 801.812 kb on + strand, within ABZR87_RS19720at 801.812 kb on + strand, within ABZR87_RS19720at 801.812 kb on + strand, within ABZR87_RS19720at 801.813 kb on - strand, within ABZR87_RS19720at 801.813 kb on - strand, within ABZR87_RS19720at 801.813 kb on - strand, within ABZR87_RS19720at 801.860 kb on - strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.995 kb on + strand, within ABZR87_RS19720at 801.996 kb on - strand, within ABZR87_RS19720at 801.996 kb on - strand, within ABZR87_RS19720at 802.292 kb on + strand, within ABZR87_RS19720at 802.325 kb on + strand, within ABZR87_RS19720at 802.325 kb on + strand, within ABZR87_RS19720at 802.437 kb on - strand, within ABZR87_RS19720at 802.437 kb on - strand, within ABZR87_RS19720

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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797,462 + ABZR87_RS19705 0.67 +1.4
797,462 + ABZR87_RS19705 0.67 +1.0
797,463 + ABZR87_RS19705 0.68 +1.2
797,463 - ABZR87_RS19705 0.68 +0.4
797,498 + ABZR87_RS19705 0.70 -0.0
797,498 + ABZR87_RS19705 0.70 -0.0
797,654 + ABZR87_RS19705 0.81 +0.3
797,654 + ABZR87_RS19705 0.81 -0.3
797,654 + ABZR87_RS19705 0.81 +1.3
797,654 + ABZR87_RS19705 0.81 +0.8
797,655 - ABZR87_RS19705 0.81 +0.5
797,655 - ABZR87_RS19705 0.81 +0.2
797,715 + ABZR87_RS19705 0.86 +0.3
797,783 + +0.7
797,783 + -0.3
798,274 + +1.3
798,765 + -0.7
798,765 + -0.7
798,765 + -0.1
798,766 - -0.3
798,766 - +3.0
798,942 + ABZR87_RS19715 0.16 -2.7
799,044 + ABZR87_RS19715 0.19 +0.0
799,045 - ABZR87_RS19715 0.19 -0.6
799,061 + ABZR87_RS19715 0.19 -0.2
799,062 - ABZR87_RS19715 0.19 -0.8
799,062 - ABZR87_RS19715 0.19 -1.4
799,062 - ABZR87_RS19715 0.19 -0.0
799,143 + ABZR87_RS19715 0.22 -1.4
799,143 + ABZR87_RS19715 0.22 -2.3
799,144 - ABZR87_RS19715 0.22 -1.4
799,266 + ABZR87_RS19715 0.26 -1.4
799,267 - ABZR87_RS19715 0.26 -0.7
799,359 + ABZR87_RS19715 0.29 -0.5
799,360 - ABZR87_RS19715 0.29 -0.7
799,360 - ABZR87_RS19715 0.29 -1.3
799,510 - ABZR87_RS19715 0.34 -2.0
799,611 + ABZR87_RS19715 0.37 -0.8
799,612 - ABZR87_RS19715 0.37 +0.5
799,612 - ABZR87_RS19715 0.37 -0.5
799,612 - ABZR87_RS19715 0.37 -0.4
799,612 - ABZR87_RS19715 0.37 +0.0
799,626 + ABZR87_RS19715 0.38 -0.1
799,657 + ABZR87_RS19715 0.39 -0.5
799,657 + ABZR87_RS19715 0.39 -0.4
799,657 + ABZR87_RS19715 0.39 -2.3
799,657 + ABZR87_RS19715 0.39 -0.2
799,657 + ABZR87_RS19715 0.39 -1.4
799,657 + ABZR87_RS19715 0.39 -0.8
799,657 + ABZR87_RS19715 0.39 -0.2
799,658 - ABZR87_RS19715 0.39 -0.6
799,658 - ABZR87_RS19715 0.39 -3.1
799,658 - ABZR87_RS19715 0.39 -2.0
799,658 - ABZR87_RS19715 0.39 -1.1
799,661 + ABZR87_RS19715 0.39 -0.3
799,662 - ABZR87_RS19715 0.39 -0.8
799,662 - ABZR87_RS19715 0.39 -1.4
799,662 - ABZR87_RS19715 0.39 -1.8
799,722 + ABZR87_RS19715 0.41 -1.3
799,723 - ABZR87_RS19715 0.41 +0.5
799,723 - ABZR87_RS19715 0.41 -3.0
799,723 - ABZR87_RS19715 0.41 -0.9
799,723 - ABZR87_RS19715 0.41 -1.4
799,723 - ABZR87_RS19715 0.41 +0.2
799,825 - ABZR87_RS19715 0.44 -0.6
799,873 + ABZR87_RS19715 0.46 -0.6
799,874 - ABZR87_RS19715 0.46 -0.4
799,874 - ABZR87_RS19715 0.46 -0.8
799,874 - ABZR87_RS19715 0.46 -0.4
799,874 - ABZR87_RS19715 0.46 +0.4
799,886 - ABZR87_RS19715 0.46 -0.4
799,953 + ABZR87_RS19715 0.48 +0.5
799,953 + ABZR87_RS19715 0.48 +0.6
800,034 + ABZR87_RS19715 0.51 -1.0
800,035 - ABZR87_RS19715 0.51 -1.4
800,035 - ABZR87_RS19715 0.51 -0.1
800,595 + ABZR87_RS19715 0.69 +0.1
800,595 + ABZR87_RS19715 0.69 -0.5
800,595 + ABZR87_RS19715 0.69 -0.7
800,595 + ABZR87_RS19715 0.69 -0.7
800,596 - ABZR87_RS19715 0.69 -1.2
800,596 - ABZR87_RS19715 0.69 -1.8
800,596 - ABZR87_RS19715 0.69 -0.5
800,739 + ABZR87_RS19715 0.74 -0.3
800,739 + ABZR87_RS19715 0.74 -0.7
800,739 + ABZR87_RS19715 0.74 -0.2
800,739 + ABZR87_RS19715 0.74 -0.4
800,739 + ABZR87_RS19715 0.74 -1.3
800,740 - ABZR87_RS19715 0.74 -2.3
800,740 - ABZR87_RS19715 0.74 +0.2
800,740 - ABZR87_RS19715 0.74 -0.2
800,740 - ABZR87_RS19715 0.74 -0.8
800,740 - ABZR87_RS19715 0.74 -1.0
800,740 - ABZR87_RS19715 0.74 -1.1
800,740 - ABZR87_RS19715 0.74 +0.0
800,740 - ABZR87_RS19715 0.74 -0.2
800,740 - ABZR87_RS19715 0.74 -0.5
800,740 - ABZR87_RS19715 0.74 -1.5
800,973 + ABZR87_RS19715 0.81 +0.2
800,974 - ABZR87_RS19715 0.81 -3.1
801,010 - ABZR87_RS19715 0.82 -0.1
801,010 - ABZR87_RS19715 0.82 -1.0
801,010 - ABZR87_RS19715 0.82 -0.5
801,084 + ABZR87_RS19715 0.85 -0.6
801,084 + ABZR87_RS19715 0.85 -1.9
801,085 - ABZR87_RS19715 0.85 +0.2
801,085 - ABZR87_RS19715 0.85 -0.8
801,219 + ABZR87_RS19715 0.89 -0.9
801,219 + ABZR87_RS19715 0.89 -0.7
801,220 - ABZR87_RS19715 0.89 -1.5
801,220 - ABZR87_RS19715 0.89 -2.3
801,250 + -2.3
801,251 - -0.0
801,251 - -0.3
801,442 - -2.6
801,560 + +0.9
801,560 + +0.4
801,560 + -0.1
801,560 + -0.2
801,608 - -1.2
801,731 + ABZR87_RS19720 0.15 +0.1
801,812 + ABZR87_RS19720 0.22 +0.0
801,812 + ABZR87_RS19720 0.22 -1.4
801,812 + ABZR87_RS19720 0.22 -1.0
801,813 - ABZR87_RS19720 0.22 -0.7
801,813 - ABZR87_RS19720 0.22 -1.5
801,813 - ABZR87_RS19720 0.22 +0.4
801,860 - ABZR87_RS19720 0.26 -0.4
801,995 + ABZR87_RS19720 0.38 +0.4
801,995 + ABZR87_RS19720 0.38 -1.1
801,995 + ABZR87_RS19720 0.38 -2.5
801,995 + ABZR87_RS19720 0.38 -1.8
801,996 - ABZR87_RS19720 0.38 -1.4
801,996 - ABZR87_RS19720 0.38 -0.1
802,292 + ABZR87_RS19720 0.64 -1.3
802,325 + ABZR87_RS19720 0.67 -0.4
802,325 + ABZR87_RS19720 0.67 +0.7
802,437 - ABZR87_RS19720 0.76 -1.5
802,437 - ABZR87_RS19720 0.76 -1.9

Or see this region's nucleotide sequence