Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19175 and ABZR87_RS19180 are separated by 267 nucleotides ABZR87_RS19180 and ABZR87_RS19185 overlap by 17 nucleotides ABZR87_RS19185 and ABZR87_RS19190 are separated by 105 nucleotides
ABZR87_RS19175: ABZR87_RS19175 - AraC family transcriptional regulator, at 666,060 to 666,839
_RS19175
ABZR87_RS19180: ABZR87_RS19180 - ATP-binding protein, at 667,107 to 668,651
_RS19180
ABZR87_RS19185: ABZR87_RS19185 - response regulator, at 668,635 to 669,294
_RS19185
ABZR87_RS19190: ABZR87_RS19190 - Spy/CpxP family protein refolding chaperone, at 669,400 to 669,975
_RS19190
Position (kb) 667
668
669 Strain fitness (log2 ratio) -1
0
1
2 at 666.224 kb on - strand, within ABZR87_RS19175 at 666.224 kb on - strand, within ABZR87_RS19175 at 666.267 kb on + strand, within ABZR87_RS19175 at 666.268 kb on - strand, within ABZR87_RS19175 at 666.430 kb on - strand, within ABZR87_RS19175 at 666.619 kb on + strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.952 kb on + strand at 666.952 kb on + strand at 666.998 kb on + strand at 666.998 kb on + strand at 666.998 kb on + strand at 666.998 kb on + strand at 666.999 kb on - strand at 666.999 kb on - strand at 667.030 kb on + strand at 667.030 kb on + strand at 667.227 kb on + strand at 667.227 kb on + strand at 667.228 kb on - strand at 667.288 kb on - strand, within ABZR87_RS19180 at 667.715 kb on + strand, within ABZR87_RS19180 at 667.715 kb on + strand, within ABZR87_RS19180 at 667.716 kb on - strand, within ABZR87_RS19180 at 667.839 kb on + strand, within ABZR87_RS19180 at 667.839 kb on + strand, within ABZR87_RS19180 at 667.839 kb on + strand, within ABZR87_RS19180 at 667.840 kb on - strand, within ABZR87_RS19180 at 667.840 kb on - strand, within ABZR87_RS19180 at 668.042 kb on + strand, within ABZR87_RS19180 at 668.043 kb on - strand, within ABZR87_RS19180 at 668.103 kb on + strand, within ABZR87_RS19180 at 668.103 kb on + strand, within ABZR87_RS19180 at 668.103 kb on + strand, within ABZR87_RS19180 at 668.103 kb on + strand, within ABZR87_RS19180 at 668.103 kb on + strand, within ABZR87_RS19180 at 668.104 kb on - strand, within ABZR87_RS19180 at 668.104 kb on - strand, within ABZR87_RS19180 at 668.104 kb on - strand, within ABZR87_RS19180 at 668.104 kb on - strand, within ABZR87_RS19180 at 668.331 kb on + strand, within ABZR87_RS19180 at 668.333 kb on + strand, within ABZR87_RS19180 at 668.334 kb on - strand, within ABZR87_RS19180 at 668.687 kb on - strand at 668.687 kb on - strand at 668.687 kb on - strand at 668.705 kb on - strand, within ABZR87_RS19185 at 668.731 kb on - strand, within ABZR87_RS19185 at 668.731 kb on - strand, within ABZR87_RS19185 at 668.920 kb on + strand, within ABZR87_RS19185 at 668.921 kb on - strand, within ABZR87_RS19185 at 669.038 kb on - strand, within ABZR87_RS19185 at 669.038 kb on - strand, within ABZR87_RS19185 at 669.038 kb on - strand, within ABZR87_RS19185 at 669.157 kb on + strand, within ABZR87_RS19185 at 669.158 kb on - strand, within ABZR87_RS19185 at 669.346 kb on - strand at 669.350 kb on + strand at 669.350 kb on + strand at 669.351 kb on + strand at 669.351 kb on - strand at 669.351 kb on - strand at 669.356 kb on + strand at 669.357 kb on - strand at 669.357 kb on - strand at 669.357 kb on - strand at 669.357 kb on - strand at 669.384 kb on + strand at 669.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 666,224 - ABZR87_RS19175 0.21 -0.3 666,224 - ABZR87_RS19175 0.21 -0.3 666,267 + ABZR87_RS19175 0.27 -1.7 666,268 - ABZR87_RS19175 0.27 +0.7 666,430 - ABZR87_RS19175 0.47 -0.3 666,619 + ABZR87_RS19175 0.72 -0.5 666,620 - ABZR87_RS19175 0.72 -0.0 666,620 - ABZR87_RS19175 0.72 +2.0 666,620 - ABZR87_RS19175 0.72 -1.6 666,952 + -0.4 666,952 + -1.0 666,998 + +0.1 666,998 + +0.0 666,998 + +0.1 666,998 + -0.6 666,999 - +0.1 666,999 - -0.4 667,030 + +0.0 667,030 + +1.0 667,227 + +0.7 667,227 + +0.7 667,228 - +0.4 667,288 - ABZR87_RS19180 0.12 -0.2 667,715 + ABZR87_RS19180 0.39 -0.7 667,715 + ABZR87_RS19180 0.39 +1.1 667,716 - ABZR87_RS19180 0.39 +1.0 667,839 + ABZR87_RS19180 0.47 +0.5 667,839 + ABZR87_RS19180 0.47 -0.8 667,839 + ABZR87_RS19180 0.47 -0.4 667,840 - ABZR87_RS19180 0.47 -1.1 667,840 - ABZR87_RS19180 0.47 +0.8 668,042 + ABZR87_RS19180 0.61 +1.3 668,043 - ABZR87_RS19180 0.61 +0.2 668,103 + ABZR87_RS19180 0.64 -0.2 668,103 + ABZR87_RS19180 0.64 -1.6 668,103 + ABZR87_RS19180 0.64 -0.6 668,103 + ABZR87_RS19180 0.64 -0.5 668,103 + ABZR87_RS19180 0.64 -0.3 668,104 - ABZR87_RS19180 0.65 +0.7 668,104 - ABZR87_RS19180 0.65 -0.7 668,104 - ABZR87_RS19180 0.65 -0.4 668,104 - ABZR87_RS19180 0.65 -0.4 668,331 + ABZR87_RS19180 0.79 -0.5 668,333 + ABZR87_RS19180 0.79 +0.7 668,334 - ABZR87_RS19180 0.79 +0.8 668,687 - +0.6 668,687 - -1.2 668,687 - -0.4 668,705 - ABZR87_RS19185 0.11 +0.2 668,731 - ABZR87_RS19185 0.15 -0.4 668,731 - ABZR87_RS19185 0.15 -0.0 668,920 + ABZR87_RS19185 0.43 +0.4 668,921 - ABZR87_RS19185 0.43 +1.1 669,038 - ABZR87_RS19185 0.61 +0.4 669,038 - ABZR87_RS19185 0.61 -1.4 669,038 - ABZR87_RS19185 0.61 +1.1 669,157 + ABZR87_RS19185 0.79 +1.3 669,158 - ABZR87_RS19185 0.79 +0.4 669,346 - -1.2 669,350 + -0.4 669,350 + -0.1 669,351 + +0.9 669,351 - -0.6 669,351 - -0.9 669,356 + +0.3 669,357 - -1.7 669,357 - +2.2 669,357 - -0.5 669,357 - +0.2 669,384 + -0.5 669,385 - +0.1
Or see this region's nucleotide sequence