Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19170 and ABZR87_RS19175 are separated by 89 nucleotides ABZR87_RS19175 and ABZR87_RS19180 are separated by 267 nucleotides
ABZR87_RS19170: ABZR87_RS19170 - DMT family transporter, at 665,053 to 665,970
_RS19170
ABZR87_RS19175: ABZR87_RS19175 - AraC family transcriptional regulator, at 666,060 to 666,839
_RS19175
ABZR87_RS19180: ABZR87_RS19180 - ATP-binding protein, at 667,107 to 668,651
_RS19180
Position (kb) 666
667 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 665.294 kb on + strand, within ABZR87_RS19170 at 665.295 kb on - strand, within ABZR87_RS19170 at 665.295 kb on - strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.298 kb on - strand, within ABZR87_RS19170 at 665.715 kb on + strand, within ABZR87_RS19170 at 665.715 kb on + strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.897 kb on - strand at 665.933 kb on + strand at 665.933 kb on + strand at 665.934 kb on - strand at 665.934 kb on - strand at 665.934 kb on - strand at 665.970 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.098 kb on - strand at 666.224 kb on - strand, within ABZR87_RS19175 at 666.224 kb on - strand, within ABZR87_RS19175 at 666.267 kb on + strand, within ABZR87_RS19175 at 666.268 kb on - strand, within ABZR87_RS19175 at 666.430 kb on - strand, within ABZR87_RS19175 at 666.619 kb on + strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.952 kb on + strand at 666.952 kb on + strand at 666.998 kb on + strand at 666.998 kb on + strand at 666.998 kb on + strand at 666.998 kb on + strand at 666.999 kb on - strand at 666.999 kb on - strand at 667.030 kb on + strand at 667.030 kb on + strand at 667.227 kb on + strand at 667.227 kb on + strand at 667.228 kb on - strand at 667.288 kb on - strand, within ABZR87_RS19180 at 667.715 kb on + strand, within ABZR87_RS19180 at 667.715 kb on + strand, within ABZR87_RS19180 at 667.716 kb on - strand, within ABZR87_RS19180 at 667.839 kb on + strand, within ABZR87_RS19180 at 667.839 kb on + strand, within ABZR87_RS19180 at 667.839 kb on + strand, within ABZR87_RS19180
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 665,294 + ABZR87_RS19170 0.26 -1.4 665,295 - ABZR87_RS19170 0.26 -0.5 665,295 - ABZR87_RS19170 0.26 -0.5 665,297 + ABZR87_RS19170 0.27 -0.5 665,297 + ABZR87_RS19170 0.27 -3.2 665,297 + ABZR87_RS19170 0.27 -0.5 665,298 - ABZR87_RS19170 0.27 -0.1 665,715 + ABZR87_RS19170 0.72 -1.1 665,715 + ABZR87_RS19170 0.72 -3.2 665,716 - ABZR87_RS19170 0.72 -0.3 665,716 - ABZR87_RS19170 0.72 -0.7 665,716 - ABZR87_RS19170 0.72 +1.0 665,897 - +0.9 665,933 + +0.3 665,933 + -1.2 665,934 - -0.2 665,934 - +0.4 665,934 - -0.2 665,970 + +0.4 666,097 + +0.7 666,097 + -1.0 666,097 + -0.2 666,097 + +0.1 666,097 + -0.1 666,097 + -2.4 666,098 - -2.2 666,224 - ABZR87_RS19175 0.21 -0.3 666,224 - ABZR87_RS19175 0.21 -0.3 666,267 + ABZR87_RS19175 0.27 -1.7 666,268 - ABZR87_RS19175 0.27 +0.7 666,430 - ABZR87_RS19175 0.47 -0.3 666,619 + ABZR87_RS19175 0.72 -0.5 666,620 - ABZR87_RS19175 0.72 -0.0 666,620 - ABZR87_RS19175 0.72 +2.0 666,620 - ABZR87_RS19175 0.72 -1.6 666,952 + -0.4 666,952 + -1.0 666,998 + +0.1 666,998 + +0.0 666,998 + +0.1 666,998 + -0.6 666,999 - +0.1 666,999 - -0.4 667,030 + +0.0 667,030 + +1.0 667,227 + +0.7 667,227 + +0.7 667,228 - +0.4 667,288 - ABZR87_RS19180 0.12 -0.2 667,715 + ABZR87_RS19180 0.39 -0.7 667,715 + ABZR87_RS19180 0.39 +1.1 667,716 - ABZR87_RS19180 0.39 +1.0 667,839 + ABZR87_RS19180 0.47 +0.5 667,839 + ABZR87_RS19180 0.47 -0.8 667,839 + ABZR87_RS19180 0.47 -0.4
Or see this region's nucleotide sequence