Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18720 and ABZR87_RS18725 overlap by 1 nucleotides ABZR87_RS18725 and ABZR87_RS18730 overlap by 4 nucleotides
ABZR87_RS18720: ABZR87_RS18720 - TonB-dependent receptor, at 551,475 to 553,793
_RS18720
ABZR87_RS18725: ABZR87_RS18725 - sialidase family protein, at 553,793 to 555,046
_RS18725
ABZR87_RS18730: ABZR87_RS18730 - redoxin domain-containing protein, at 555,043 to 555,549
_RS18730
Position (kb) 553
554
555
556 Strain fitness (log2 ratio) -2
-1
0
1 at 552.839 kb on - strand, within ABZR87_RS18720 at 552.963 kb on + strand, within ABZR87_RS18720 at 552.964 kb on - strand, within ABZR87_RS18720 at 553.241 kb on + strand, within ABZR87_RS18720 at 553.242 kb on - strand, within ABZR87_RS18720 at 553.242 kb on - strand, within ABZR87_RS18720 at 553.278 kb on + strand, within ABZR87_RS18720 at 553.278 kb on + strand, within ABZR87_RS18720 at 553.279 kb on - strand, within ABZR87_RS18720 at 553.279 kb on - strand, within ABZR87_RS18720 at 553.279 kb on - strand, within ABZR87_RS18720 at 553.365 kb on + strand, within ABZR87_RS18720 at 553.473 kb on + strand, within ABZR87_RS18720 at 553.473 kb on + strand, within ABZR87_RS18720 at 553.474 kb on - strand, within ABZR87_RS18720 at 553.626 kb on + strand at 553.627 kb on - strand at 553.671 kb on + strand at 553.676 kb on + strand at 553.732 kb on - strand at 553.740 kb on + strand at 553.741 kb on - strand at 553.767 kb on + strand at 553.767 kb on + strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.768 kb on - strand at 553.791 kb on + strand at 553.791 kb on + strand at 553.791 kb on + strand at 553.792 kb on - strand at 553.792 kb on - strand at 553.792 kb on - strand at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.057 kb on + strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.058 kb on - strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.111 kb on + strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.112 kb on - strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.144 kb on + strand, within ABZR87_RS18725 at 554.337 kb on - strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.354 kb on + strand, within ABZR87_RS18725 at 554.355 kb on - strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.357 kb on + strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.358 kb on - strand, within ABZR87_RS18725 at 554.536 kb on + strand, within ABZR87_RS18725 at 554.537 kb on - strand, within ABZR87_RS18725 at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.954 kb on + strand at 554.955 kb on - strand at 554.955 kb on - strand at 554.955 kb on - strand at 554.955 kb on - strand at 555.077 kb on + strand at 555.077 kb on + strand at 555.078 kb on - strand at 555.220 kb on + strand, within ABZR87_RS18730 at 555.221 kb on - strand, within ABZR87_RS18730 at 555.388 kb on + strand, within ABZR87_RS18730 at 555.389 kb on - strand, within ABZR87_RS18730 at 555.462 kb on + strand, within ABZR87_RS18730 at 555.462 kb on + strand, within ABZR87_RS18730 at 555.486 kb on + strand, within ABZR87_RS18730 at 555.486 kb on + strand, within ABZR87_RS18730 at 555.524 kb on + strand at 555.524 kb on + strand at 555.524 kb on + strand at 555.525 kb on - strand at 555.525 kb on - strand at 555.548 kb on - strand at 555.548 kb on - strand at 555.586 kb on - strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.608 kb on + strand at 555.609 kb on - strand at 555.609 kb on - strand at 555.610 kb on + strand at 555.610 kb on + strand at 555.611 kb on - strand at 555.695 kb on + strand at 555.696 kb on - strand at 555.754 kb on + strand at 555.755 kb on - strand at 555.790 kb on + strand at 555.831 kb on + strand at 555.831 kb on + strand at 555.831 kb on + strand at 555.832 kb on - strand at 555.832 kb on - strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.921 kb on + strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.922 kb on - strand at 555.945 kb on - strand at 555.945 kb on - strand at 556.013 kb on + strand at 556.013 kb on + strand at 556.013 kb on + strand at 556.014 kb on - strand at 556.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 552,839 - ABZR87_RS18720 0.59 +1.1 552,963 + ABZR87_RS18720 0.64 +0.4 552,964 - ABZR87_RS18720 0.64 +1.1 553,241 + ABZR87_RS18720 0.76 +0.1 553,242 - ABZR87_RS18720 0.76 -0.5 553,242 - ABZR87_RS18720 0.76 -1.3 553,278 + ABZR87_RS18720 0.78 -0.2 553,278 + ABZR87_RS18720 0.78 -0.6 553,279 - ABZR87_RS18720 0.78 -1.4 553,279 - ABZR87_RS18720 0.78 -0.8 553,279 - ABZR87_RS18720 0.78 -0.3 553,365 + ABZR87_RS18720 0.82 -0.6 553,473 + ABZR87_RS18720 0.86 -2.7 553,473 + ABZR87_RS18720 0.86 +0.5 553,474 - ABZR87_RS18720 0.86 -1.2 553,626 + -0.0 553,627 - +0.1 553,671 + -0.5 553,676 + -0.0 553,732 - -0.3 553,740 + +0.2 553,741 - +0.3 553,767 + -1.6 553,767 + +0.2 553,768 - +0.3 553,768 - +0.8 553,768 - -0.1 553,768 - +0.3 553,768 - +0.6 553,768 - +0.9 553,768 - +0.3 553,791 + -0.0 553,791 + +0.2 553,791 + +0.7 553,792 - +1.0 553,792 - -1.4 553,792 - -1.0 554,057 + ABZR87_RS18725 0.21 +0.0 554,057 + ABZR87_RS18725 0.21 -0.3 554,057 + ABZR87_RS18725 0.21 -0.8 554,057 + ABZR87_RS18725 0.21 +0.2 554,057 + ABZR87_RS18725 0.21 -1.2 554,057 + ABZR87_RS18725 0.21 -1.0 554,058 - ABZR87_RS18725 0.21 +0.9 554,058 - ABZR87_RS18725 0.21 -1.1 554,058 - ABZR87_RS18725 0.21 -0.0 554,111 + ABZR87_RS18725 0.25 +1.2 554,111 + ABZR87_RS18725 0.25 -0.0 554,111 + ABZR87_RS18725 0.25 +0.2 554,111 + ABZR87_RS18725 0.25 +0.2 554,111 + ABZR87_RS18725 0.25 -0.5 554,111 + ABZR87_RS18725 0.25 -0.6 554,111 + ABZR87_RS18725 0.25 +0.4 554,111 + ABZR87_RS18725 0.25 +0.1 554,111 + ABZR87_RS18725 0.25 +0.2 554,111 + ABZR87_RS18725 0.25 -1.4 554,112 - ABZR87_RS18725 0.25 -1.6 554,112 - ABZR87_RS18725 0.25 -0.8 554,112 - ABZR87_RS18725 0.25 +1.0 554,112 - ABZR87_RS18725 0.25 +0.5 554,112 - ABZR87_RS18725 0.25 -0.0 554,112 - ABZR87_RS18725 0.25 -0.1 554,144 + ABZR87_RS18725 0.28 -0.6 554,144 + ABZR87_RS18725 0.28 +1.4 554,144 + ABZR87_RS18725 0.28 -0.6 554,337 - ABZR87_RS18725 0.43 -0.4 554,354 + ABZR87_RS18725 0.45 -0.2 554,354 + ABZR87_RS18725 0.45 -0.7 554,354 + ABZR87_RS18725 0.45 -0.1 554,355 - ABZR87_RS18725 0.45 +0.3 554,357 + ABZR87_RS18725 0.45 -0.6 554,357 + ABZR87_RS18725 0.45 -2.1 554,357 + ABZR87_RS18725 0.45 +0.5 554,357 + ABZR87_RS18725 0.45 +0.5 554,357 + ABZR87_RS18725 0.45 -0.6 554,357 + ABZR87_RS18725 0.45 +0.5 554,358 - ABZR87_RS18725 0.45 +0.4 554,358 - ABZR87_RS18725 0.45 +0.3 554,358 - ABZR87_RS18725 0.45 -0.2 554,358 - ABZR87_RS18725 0.45 -0.2 554,358 - ABZR87_RS18725 0.45 -2.1 554,536 + ABZR87_RS18725 0.59 -0.0 554,537 - ABZR87_RS18725 0.59 +0.2 554,954 + +0.1 554,954 + -1.0 554,954 + +0.1 554,954 + -0.5 554,954 + -1.2 554,954 + +0.9 554,955 - -0.2 554,955 - -0.5 554,955 - +0.4 554,955 - -0.8 555,077 + -0.5 555,077 + -1.4 555,078 - -0.5 555,220 + ABZR87_RS18730 0.35 +0.7 555,221 - ABZR87_RS18730 0.35 -1.0 555,388 + ABZR87_RS18730 0.68 -1.4 555,389 - ABZR87_RS18730 0.68 -1.8 555,462 + ABZR87_RS18730 0.83 -0.4 555,462 + ABZR87_RS18730 0.83 -0.4 555,486 + ABZR87_RS18730 0.87 -1.6 555,486 + ABZR87_RS18730 0.87 -1.5 555,524 + -0.3 555,524 + -0.0 555,524 + +0.6 555,525 - +0.6 555,525 - -1.2 555,548 - +0.2 555,548 - +1.7 555,586 - -1.0 555,608 + -0.7 555,608 + +0.7 555,608 + -0.1 555,608 + +0.1 555,609 - -1.1 555,609 - -1.8 555,610 + -1.6 555,610 + +0.2 555,611 - +0.5 555,695 + +0.6 555,696 - -0.3 555,754 + -1.1 555,755 - -0.0 555,790 + +1.0 555,831 + -0.2 555,831 + -0.7 555,831 + +0.7 555,832 - +0.2 555,832 - +0.1 555,921 + -0.2 555,921 + -1.4 555,921 + -1.5 555,921 + -0.2 555,922 - +0.2 555,922 - -1.4 555,922 - -0.3 555,922 - +0.5 555,922 - +0.4 555,945 - +0.0 555,945 - -0.5 556,013 + -1.4 556,013 + +1.3 556,013 + +1.1 556,014 - -0.7 556,014 - +1.4
Or see this region's nucleotide sequence