Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18715

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18710 and ABZR87_RS18715 are separated by 198 nucleotidesABZR87_RS18715 and ABZR87_RS18720 are separated by 82 nucleotides ABZR87_RS18710: ABZR87_RS18710 - hypothetical protein, at 549,611 to 550,792 _RS18710 ABZR87_RS18715: ABZR87_RS18715 - DUF2946 domain-containing protein, at 550,991 to 551,392 _RS18715 ABZR87_RS18720: ABZR87_RS18720 - TonB-dependent receptor, at 551,475 to 553,793 _RS18720 Position (kb) 550 551 552Strain fitness (log2 ratio) -2 -1 0 1 2 3at 550.113 kb on + strand, within ABZR87_RS18710at 550.114 kb on - strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.125 kb on + strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.126 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.378 kb on - strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.450 kb on + strand, within ABZR87_RS18710at 550.451 kb on - strand, within ABZR87_RS18710at 550.451 kb on - strand, within ABZR87_RS18710at 550.451 kb on - strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.580 kb on + strand, within ABZR87_RS18710at 550.581 kb on - strand, within ABZR87_RS18710at 550.581 kb on - strand, within ABZR87_RS18710at 550.581 kb on - strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.590 kb on + strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.591 kb on - strand, within ABZR87_RS18710at 550.861 kb on - strandat 550.861 kb on - strandat 550.861 kb on - strandat 550.961 kb on - strandat 550.962 kb on + strandat 550.962 kb on + strandat 550.962 kb on + strandat 550.962 kb on + strandat 550.963 kb on - strandat 550.986 kb on + strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.987 kb on - strandat 550.991 kb on - strandat 551.034 kb on + strand, within ABZR87_RS18715at 551.035 kb on - strand, within ABZR87_RS18715at 551.035 kb on - strand, within ABZR87_RS18715at 551.035 kb on - strand, within ABZR87_RS18715at 551.043 kb on + strand, within ABZR87_RS18715at 551.043 kb on + strand, within ABZR87_RS18715at 551.043 kb on + strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.044 kb on - strand, within ABZR87_RS18715at 551.045 kb on - strand, within ABZR87_RS18715at 551.213 kb on + strand, within ABZR87_RS18715at 551.213 kb on + strand, within ABZR87_RS18715at 551.213 kb on + strand, within ABZR87_RS18715at 551.214 kb on - strand, within ABZR87_RS18715at 551.214 kb on - strand, within ABZR87_RS18715at 551.288 kb on + strand, within ABZR87_RS18715at 551.288 kb on + strand, within ABZR87_RS18715at 551.288 kb on + strand, within ABZR87_RS18715at 551.289 kb on - strand, within ABZR87_RS18715at 551.289 kb on - strand, within ABZR87_RS18715at 551.324 kb on + strand, within ABZR87_RS18715at 551.325 kb on - strand, within ABZR87_RS18715at 551.407 kb on + strandat 551.407 kb on + strandat 551.407 kb on + strandat 551.407 kb on + strandat 551.407 kb on + strandat 551.408 kb on - strandat 551.673 kb on - strandat 551.673 kb on - strandat 551.673 kb on - strandat 551.752 kb on - strand, within ABZR87_RS18720at 551.752 kb on - strand, within ABZR87_RS18720at 551.752 kb on - strand, within ABZR87_RS18720at 551.853 kb on + strand, within ABZR87_RS18720at 551.853 kb on + strand, within ABZR87_RS18720at 551.853 kb on + strand, within ABZR87_RS18720at 551.854 kb on - strand, within ABZR87_RS18720at 551.854 kb on - strand, within ABZR87_RS18720at 551.854 kb on - strand, within ABZR87_RS18720at 551.854 kb on - strand, within ABZR87_RS18720at 551.854 kb on - strand, within ABZR87_RS18720at 551.895 kb on + strand, within ABZR87_RS18720at 551.895 kb on + strand, within ABZR87_RS18720at 551.896 kb on - strand, within ABZR87_RS18720at 551.951 kb on + strand, within ABZR87_RS18720at 551.952 kb on - strand, within ABZR87_RS18720at 551.954 kb on + strand, within ABZR87_RS18720at 551.958 kb on + strand, within ABZR87_RS18720at 551.958 kb on + strand, within ABZR87_RS18720at 551.958 kb on + strand, within ABZR87_RS18720at 551.959 kb on - strand, within ABZR87_RS18720at 552.075 kb on + strand, within ABZR87_RS18720at 552.075 kb on + strand, within ABZR87_RS18720at 552.076 kb on - strand, within ABZR87_RS18720at 552.076 kb on - strand, within ABZR87_RS18720at 552.087 kb on + strand, within ABZR87_RS18720at 552.088 kb on - strand, within ABZR87_RS18720at 552.159 kb on + strand, within ABZR87_RS18720at 552.160 kb on - strand, within ABZR87_RS18720at 552.160 kb on - strand, within ABZR87_RS18720at 552.207 kb on + strand, within ABZR87_RS18720at 552.207 kb on + strand, within ABZR87_RS18720at 552.208 kb on - strand, within ABZR87_RS18720at 552.208 kb on - strand, within ABZR87_RS18720at 552.364 kb on - strand, within ABZR87_RS18720at 552.364 kb on - strand, within ABZR87_RS18720

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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550,113 + ABZR87_RS18710 0.42 +0.5
550,114 - ABZR87_RS18710 0.43 -1.0
550,125 + ABZR87_RS18710 0.43 +0.5
550,125 + ABZR87_RS18710 0.43 +0.6
550,125 + ABZR87_RS18710 0.43 +0.0
550,125 + ABZR87_RS18710 0.43 +3.5
550,125 + ABZR87_RS18710 0.43 +0.9
550,125 + ABZR87_RS18710 0.43 +0.3
550,125 + ABZR87_RS18710 0.43 -1.0
550,125 + ABZR87_RS18710 0.43 +0.7
550,125 + ABZR87_RS18710 0.43 -1.3
550,125 + ABZR87_RS18710 0.43 +1.0
550,125 + ABZR87_RS18710 0.43 -0.2
550,125 + ABZR87_RS18710 0.43 -0.4
550,126 - ABZR87_RS18710 0.44 -0.5
550,126 - ABZR87_RS18710 0.44 +0.0
550,126 - ABZR87_RS18710 0.44 -1.5
550,126 - ABZR87_RS18710 0.44 +2.0
550,126 - ABZR87_RS18710 0.44 -2.5
550,126 - ABZR87_RS18710 0.44 -0.7
550,378 - ABZR87_RS18710 0.65 -1.8
550,378 - ABZR87_RS18710 0.65 -0.1
550,378 - ABZR87_RS18710 0.65 -0.0
550,378 - ABZR87_RS18710 0.65 +1.5
550,378 - ABZR87_RS18710 0.65 +0.5
550,450 + ABZR87_RS18710 0.71 -1.1
550,450 + ABZR87_RS18710 0.71 +0.0
550,450 + ABZR87_RS18710 0.71 +0.2
550,450 + ABZR87_RS18710 0.71 -0.1
550,451 - ABZR87_RS18710 0.71 +0.2
550,451 - ABZR87_RS18710 0.71 -1.0
550,451 - ABZR87_RS18710 0.71 +0.5
550,580 + ABZR87_RS18710 0.82 +0.1
550,580 + ABZR87_RS18710 0.82 -0.5
550,580 + ABZR87_RS18710 0.82 +1.0
550,580 + ABZR87_RS18710 0.82 -0.1
550,580 + ABZR87_RS18710 0.82 +0.3
550,581 - ABZR87_RS18710 0.82 +0.1
550,581 - ABZR87_RS18710 0.82 -1.4
550,581 - ABZR87_RS18710 0.82 -1.2
550,590 + ABZR87_RS18710 0.83 +0.3
550,590 + ABZR87_RS18710 0.83 +0.4
550,590 + ABZR87_RS18710 0.83 +0.1
550,590 + ABZR87_RS18710 0.83 -2.3
550,590 + ABZR87_RS18710 0.83 -0.3
550,590 + ABZR87_RS18710 0.83 +0.3
550,590 + ABZR87_RS18710 0.83 -0.9
550,591 - ABZR87_RS18710 0.83 -0.1
550,591 - ABZR87_RS18710 0.83 +0.6
550,591 - ABZR87_RS18710 0.83 +0.9
550,591 - ABZR87_RS18710 0.83 +0.4
550,591 - ABZR87_RS18710 0.83 -0.7
550,591 - ABZR87_RS18710 0.83 -2.6
550,591 - ABZR87_RS18710 0.83 -0.6
550,591 - ABZR87_RS18710 0.83 -0.5
550,591 - ABZR87_RS18710 0.83 +0.8
550,591 - ABZR87_RS18710 0.83 -0.0
550,861 - +0.4
550,861 - -1.6
550,861 - +0.2
550,961 - -0.8
550,962 + -0.8
550,962 + +0.6
550,962 + +1.3
550,962 + -0.0
550,963 - -0.8
550,986 + +0.3
550,987 - +0.4
550,987 - +1.3
550,987 - -0.2
550,987 - -0.5
550,987 - +0.3
550,991 - -0.8
551,034 + ABZR87_RS18715 0.11 -0.8
551,035 - ABZR87_RS18715 0.11 +0.3
551,035 - ABZR87_RS18715 0.11 -1.9
551,035 - ABZR87_RS18715 0.11 -0.4
551,043 + ABZR87_RS18715 0.13 -0.6
551,043 + ABZR87_RS18715 0.13 -0.0
551,043 + ABZR87_RS18715 0.13 +0.0
551,044 - ABZR87_RS18715 0.13 -0.3
551,044 - ABZR87_RS18715 0.13 -1.0
551,044 - ABZR87_RS18715 0.13 -0.4
551,044 - ABZR87_RS18715 0.13 +0.2
551,045 - ABZR87_RS18715 0.13 -0.6
551,213 + ABZR87_RS18715 0.55 +0.1
551,213 + ABZR87_RS18715 0.55 -1.0
551,213 + ABZR87_RS18715 0.55 -0.6
551,214 - ABZR87_RS18715 0.55 -0.6
551,214 - ABZR87_RS18715 0.55 +0.8
551,288 + ABZR87_RS18715 0.74 +0.6
551,288 + ABZR87_RS18715 0.74 -1.7
551,288 + ABZR87_RS18715 0.74 -0.6
551,289 - ABZR87_RS18715 0.74 -0.6
551,289 - ABZR87_RS18715 0.74 +0.4
551,324 + ABZR87_RS18715 0.83 +0.3
551,325 - ABZR87_RS18715 0.83 -0.2
551,407 + +0.1
551,407 + -1.2
551,407 + +0.6
551,407 + -0.6
551,407 + -0.1
551,408 - +0.2
551,673 - -1.6
551,673 - +0.7
551,673 - +0.7
551,752 - ABZR87_RS18720 0.12 +0.4
551,752 - ABZR87_RS18720 0.12 -0.7
551,752 - ABZR87_RS18720 0.12 -0.6
551,853 + ABZR87_RS18720 0.16 +0.8
551,853 + ABZR87_RS18720 0.16 -0.4
551,853 + ABZR87_RS18720 0.16 +0.4
551,854 - ABZR87_RS18720 0.16 -1.2
551,854 - ABZR87_RS18720 0.16 +0.1
551,854 - ABZR87_RS18720 0.16 +0.5
551,854 - ABZR87_RS18720 0.16 +0.1
551,854 - ABZR87_RS18720 0.16 +1.0
551,895 + ABZR87_RS18720 0.18 +1.5
551,895 + ABZR87_RS18720 0.18 -0.2
551,896 - ABZR87_RS18720 0.18 +0.0
551,951 + ABZR87_RS18720 0.21 +1.4
551,952 - ABZR87_RS18720 0.21 -1.6
551,954 + ABZR87_RS18720 0.21 +0.7
551,958 + ABZR87_RS18720 0.21 -0.4
551,958 + ABZR87_RS18720 0.21 +1.5
551,958 + ABZR87_RS18720 0.21 -0.5
551,959 - ABZR87_RS18720 0.21 -0.1
552,075 + ABZR87_RS18720 0.26 +0.5
552,075 + ABZR87_RS18720 0.26 +0.2
552,076 - ABZR87_RS18720 0.26 -1.8
552,076 - ABZR87_RS18720 0.26 +1.2
552,087 + ABZR87_RS18720 0.26 -0.3
552,088 - ABZR87_RS18720 0.26 -0.6
552,159 + ABZR87_RS18720 0.29 +1.0
552,160 - ABZR87_RS18720 0.30 -1.0
552,160 - ABZR87_RS18720 0.30 +0.2
552,207 + ABZR87_RS18720 0.32 +0.8
552,207 + ABZR87_RS18720 0.32 -0.3
552,208 - ABZR87_RS18720 0.32 +0.0
552,208 - ABZR87_RS18720 0.32 +0.4
552,364 - ABZR87_RS18720 0.38 -1.1
552,364 - ABZR87_RS18720 0.38 -0.5

Or see this region's nucleotide sequence