Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18610

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18605 and ABZR87_RS18610 are separated by 88 nucleotidesABZR87_RS18610 and ABZR87_RS18615 overlap by 4 nucleotidesABZR87_RS18615 and ABZR87_RS18620 overlap by 4 nucleotidesABZR87_RS18620 and ABZR87_RS18625 are separated by 1 nucleotides ABZR87_RS18605: ABZR87_RS18605 - SPFH domain-containing protein, at 527,499 to 528,542 _RS18605 ABZR87_RS18610: ABZR87_RS18610 - DUF4178 domain-containing protein, at 528,631 to 530,079 _RS18610 ABZR87_RS18615: ABZR87_RS18615 - hypothetical protein, at 530,076 to 530,264 _RS18615 ABZR87_RS18620: ABZR87_RS18620 - adenosylmethionine decarboxylase, at 530,261 to 530,686 _RS18620 ABZR87_RS18625: ABZR87_RS18625 - sensor domain-containing diguanylate cyclase, at 530,688 to 531,734 _RS18625 Position (kb) 528 529 530 531Strain fitness (log2 ratio) -2 -1 0 1 2at 527.680 kb on + strand, within ABZR87_RS18605at 527.680 kb on + strand, within ABZR87_RS18605at 527.681 kb on - strand, within ABZR87_RS18605at 527.733 kb on + strand, within ABZR87_RS18605at 527.733 kb on + strand, within ABZR87_RS18605at 527.734 kb on - strand, within ABZR87_RS18605at 527.784 kb on + strand, within ABZR87_RS18605at 527.785 kb on - strand, within ABZR87_RS18605at 527.785 kb on - strand, within ABZR87_RS18605at 527.787 kb on + strand, within ABZR87_RS18605at 527.788 kb on - strand, within ABZR87_RS18605at 527.892 kb on + strand, within ABZR87_RS18605at 527.892 kb on + strand, within ABZR87_RS18605at 527.898 kb on + strand, within ABZR87_RS18605at 527.898 kb on + strand, within ABZR87_RS18605at 527.925 kb on + strand, within ABZR87_RS18605at 527.926 kb on - strand, within ABZR87_RS18605at 527.955 kb on + strand, within ABZR87_RS18605at 527.955 kb on + strand, within ABZR87_RS18605at 527.955 kb on + strand, within ABZR87_RS18605at 527.956 kb on - strand, within ABZR87_RS18605at 527.956 kb on - strand, within ABZR87_RS18605at 527.956 kb on - strand, within ABZR87_RS18605at 527.956 kb on - strand, within ABZR87_RS18605at 527.956 kb on - strand, within ABZR87_RS18605at 528.676 kb on - strandat 528.784 kb on + strand, within ABZR87_RS18610at 528.784 kb on + strand, within ABZR87_RS18610at 528.784 kb on + strand, within ABZR87_RS18610at 528.785 kb on - strand, within ABZR87_RS18610at 528.785 kb on - strand, within ABZR87_RS18610at 528.785 kb on - strand, within ABZR87_RS18610at 528.889 kb on + strand, within ABZR87_RS18610at 528.889 kb on + strand, within ABZR87_RS18610at 528.889 kb on + strand, within ABZR87_RS18610at 528.889 kb on + strand, within ABZR87_RS18610at 528.889 kb on + strand, within ABZR87_RS18610at 528.890 kb on - strand, within ABZR87_RS18610at 529.016 kb on - strand, within ABZR87_RS18610at 529.016 kb on - strand, within ABZR87_RS18610at 529.016 kb on - strand, within ABZR87_RS18610at 529.036 kb on + strand, within ABZR87_RS18610at 529.037 kb on - strand, within ABZR87_RS18610at 529.037 kb on - strand, within ABZR87_RS18610at 529.037 kb on - strand, within ABZR87_RS18610at 529.037 kb on - strand, within ABZR87_RS18610at 529.037 kb on - strand, within ABZR87_RS18610at 529.166 kb on - strand, within ABZR87_RS18610at 529.166 kb on - strand, within ABZR87_RS18610at 529.192 kb on + strand, within ABZR87_RS18610at 529.193 kb on - strand, within ABZR87_RS18610at 529.549 kb on + strand, within ABZR87_RS18610at 529.550 kb on - strand, within ABZR87_RS18610at 529.550 kb on - strand, within ABZR87_RS18610at 529.559 kb on - strand, within ABZR87_RS18610at 529.682 kb on - strand, within ABZR87_RS18610at 529.699 kb on + strand, within ABZR87_RS18610at 529.700 kb on - strand, within ABZR87_RS18610at 529.700 kb on - strand, within ABZR87_RS18610at 529.717 kb on + strand, within ABZR87_RS18610at 529.717 kb on + strand, within ABZR87_RS18610at 529.717 kb on + strand, within ABZR87_RS18610at 529.769 kb on + strand, within ABZR87_RS18610at 529.921 kb on + strand, within ABZR87_RS18610at 529.921 kb on + strand, within ABZR87_RS18610at 529.921 kb on + strand, within ABZR87_RS18610at 529.921 kb on + strand, within ABZR87_RS18610at 529.921 kb on + strand, within ABZR87_RS18610at 529.922 kb on - strand, within ABZR87_RS18610at 529.922 kb on - strand, within ABZR87_RS18610at 529.922 kb on - strand, within ABZR87_RS18610at 530.007 kb on + strandat 530.097 kb on + strand, within ABZR87_RS18615at 530.097 kb on + strand, within ABZR87_RS18615at 530.098 kb on - strand, within ABZR87_RS18615at 530.098 kb on - strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.127 kb on + strand, within ABZR87_RS18615at 530.128 kb on - strand, within ABZR87_RS18615at 530.128 kb on - strand, within ABZR87_RS18615at 530.128 kb on - strand, within ABZR87_RS18615at 530.128 kb on - strand, within ABZR87_RS18615at 530.129 kb on + strand, within ABZR87_RS18615at 530.129 kb on + strand, within ABZR87_RS18615at 530.130 kb on - strand, within ABZR87_RS18615at 530.130 kb on - strand, within ABZR87_RS18615at 530.172 kb on + strand, within ABZR87_RS18615at 530.184 kb on - strand, within ABZR87_RS18615at 530.184 kb on - strand, within ABZR87_RS18615at 530.202 kb on + strand, within ABZR87_RS18615at 530.336 kb on + strand, within ABZR87_RS18620at 530.337 kb on - strand, within ABZR87_RS18620at 530.533 kb on + strand, within ABZR87_RS18620at 530.534 kb on - strand, within ABZR87_RS18620at 530.534 kb on - strand, within ABZR87_RS18620at 530.689 kb on + strandat 530.689 kb on + strandat 530.689 kb on + strandat 530.689 kb on + strandat 530.689 kb on + strandat 530.690 kb on - strandat 530.690 kb on - strandat 530.709 kb on + strandat 530.710 kb on - strandat 530.710 kb on - strandat 530.924 kb on + strand, within ABZR87_RS18625at 531.046 kb on + strand, within ABZR87_RS18625at 531.046 kb on + strand, within ABZR87_RS18625at 531.046 kb on + strand, within ABZR87_RS18625at 531.046 kb on + strand, within ABZR87_RS18625at 531.047 kb on - strand, within ABZR87_RS18625at 531.050 kb on + strand, within ABZR87_RS18625at 531.051 kb on - strand, within ABZR87_RS18625

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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527,680 + ABZR87_RS18605 0.17 -1.1
527,680 + ABZR87_RS18605 0.17 -0.1
527,681 - ABZR87_RS18605 0.17 -0.3
527,733 + ABZR87_RS18605 0.22 -0.7
527,733 + ABZR87_RS18605 0.22 +0.8
527,734 - ABZR87_RS18605 0.23 -0.2
527,784 + ABZR87_RS18605 0.27 -0.5
527,785 - ABZR87_RS18605 0.27 +0.6
527,785 - ABZR87_RS18605 0.27 +0.4
527,787 + ABZR87_RS18605 0.28 +0.3
527,788 - ABZR87_RS18605 0.28 -0.6
527,892 + ABZR87_RS18605 0.38 +0.4
527,892 + ABZR87_RS18605 0.38 +0.4
527,898 + ABZR87_RS18605 0.38 +0.4
527,898 + ABZR87_RS18605 0.38 -0.1
527,925 + ABZR87_RS18605 0.41 -1.0
527,926 - ABZR87_RS18605 0.41 -0.0
527,955 + ABZR87_RS18605 0.44 -0.3
527,955 + ABZR87_RS18605 0.44 -0.3
527,955 + ABZR87_RS18605 0.44 +0.8
527,956 - ABZR87_RS18605 0.44 -0.3
527,956 - ABZR87_RS18605 0.44 +0.3
527,956 - ABZR87_RS18605 0.44 +0.3
527,956 - ABZR87_RS18605 0.44 +0.0
527,956 - ABZR87_RS18605 0.44 -0.1
528,676 - +0.9
528,784 + ABZR87_RS18610 0.11 -0.7
528,784 + ABZR87_RS18610 0.11 -0.9
528,784 + ABZR87_RS18610 0.11 -0.1
528,785 - ABZR87_RS18610 0.11 -0.8
528,785 - ABZR87_RS18610 0.11 -2.3
528,785 - ABZR87_RS18610 0.11 +0.8
528,889 + ABZR87_RS18610 0.18 -2.4
528,889 + ABZR87_RS18610 0.18 -0.0
528,889 + ABZR87_RS18610 0.18 -0.2
528,889 + ABZR87_RS18610 0.18 +0.0
528,889 + ABZR87_RS18610 0.18 +0.7
528,890 - ABZR87_RS18610 0.18 -1.0
529,016 - ABZR87_RS18610 0.27 -0.4
529,016 - ABZR87_RS18610 0.27 +0.5
529,016 - ABZR87_RS18610 0.27 +0.3
529,036 + ABZR87_RS18610 0.28 +0.0
529,037 - ABZR87_RS18610 0.28 -0.0
529,037 - ABZR87_RS18610 0.28 -0.2
529,037 - ABZR87_RS18610 0.28 +0.6
529,037 - ABZR87_RS18610 0.28 -2.0
529,037 - ABZR87_RS18610 0.28 -1.2
529,166 - ABZR87_RS18610 0.37 +0.2
529,166 - ABZR87_RS18610 0.37 -0.5
529,192 + ABZR87_RS18610 0.39 +0.7
529,193 - ABZR87_RS18610 0.39 +0.4
529,549 + ABZR87_RS18610 0.63 -0.3
529,550 - ABZR87_RS18610 0.63 +1.1
529,550 - ABZR87_RS18610 0.63 +1.0
529,559 - ABZR87_RS18610 0.64 -0.0
529,682 - ABZR87_RS18610 0.73 -0.2
529,699 + ABZR87_RS18610 0.74 -0.3
529,700 - ABZR87_RS18610 0.74 -0.4
529,700 - ABZR87_RS18610 0.74 +1.0
529,717 + ABZR87_RS18610 0.75 +1.4
529,717 + ABZR87_RS18610 0.75 +0.8
529,717 + ABZR87_RS18610 0.75 -1.7
529,769 + ABZR87_RS18610 0.79 +0.0
529,921 + ABZR87_RS18610 0.89 +0.6
529,921 + ABZR87_RS18610 0.89 -1.8
529,921 + ABZR87_RS18610 0.89 +0.3
529,921 + ABZR87_RS18610 0.89 +0.1
529,921 + ABZR87_RS18610 0.89 -1.8
529,922 - ABZR87_RS18610 0.89 +2.2
529,922 - ABZR87_RS18610 0.89 -0.0
529,922 - ABZR87_RS18610 0.89 +0.3
530,007 + +0.2
530,097 + ABZR87_RS18615 0.11 -0.1
530,097 + ABZR87_RS18615 0.11 +0.4
530,098 - ABZR87_RS18615 0.12 -1.0
530,098 - ABZR87_RS18615 0.12 -0.5
530,127 + ABZR87_RS18615 0.27 -0.8
530,127 + ABZR87_RS18615 0.27 -0.4
530,127 + ABZR87_RS18615 0.27 +0.8
530,127 + ABZR87_RS18615 0.27 -0.2
530,127 + ABZR87_RS18615 0.27 -1.1
530,127 + ABZR87_RS18615 0.27 +0.4
530,127 + ABZR87_RS18615 0.27 +0.1
530,128 - ABZR87_RS18615 0.28 +0.4
530,128 - ABZR87_RS18615 0.28 +0.3
530,128 - ABZR87_RS18615 0.28 -0.2
530,128 - ABZR87_RS18615 0.28 -1.4
530,129 + ABZR87_RS18615 0.28 -0.7
530,129 + ABZR87_RS18615 0.28 -0.8
530,130 - ABZR87_RS18615 0.29 -1.1
530,130 - ABZR87_RS18615 0.29 -0.8
530,172 + ABZR87_RS18615 0.51 +0.3
530,184 - ABZR87_RS18615 0.57 -0.1
530,184 - ABZR87_RS18615 0.57 +0.2
530,202 + ABZR87_RS18615 0.67 +0.2
530,336 + ABZR87_RS18620 0.18 -0.3
530,337 - ABZR87_RS18620 0.18 -0.4
530,533 + ABZR87_RS18620 0.64 -0.1
530,534 - ABZR87_RS18620 0.64 -1.5
530,534 - ABZR87_RS18620 0.64 -2.7
530,689 + -0.5
530,689 + +0.2
530,689 + -0.6
530,689 + +0.6
530,689 + +0.1
530,690 - +0.8
530,690 - -0.8
530,709 + -0.8
530,710 - +1.0
530,710 - -0.8
530,924 + ABZR87_RS18625 0.23 -1.0
531,046 + ABZR87_RS18625 0.34 +0.1
531,046 + ABZR87_RS18625 0.34 -2.4
531,046 + ABZR87_RS18625 0.34 -1.4
531,046 + ABZR87_RS18625 0.34 +0.7
531,047 - ABZR87_RS18625 0.34 +0.4
531,050 + ABZR87_RS18625 0.35 +0.0
531,051 - ABZR87_RS18625 0.35 -0.3

Or see this region's nucleotide sequence