Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18435 and ABZR87_RS18440 overlap by 4 nucleotides ABZR87_RS18440 and ABZR87_RS18445 are separated by 8 nucleotides ABZR87_RS18445 and ABZR87_RS18450 overlap by 1 nucleotides
ABZR87_RS18435: ABZR87_RS18435 - 2-dehydropantoate 2-reductase, at 497,619 to 498,569
_RS18435
ABZR87_RS18440: ABZR87_RS18440 - VOC family protein, at 498,566 to 498,958
_RS18440
ABZR87_RS18445: ABZR87_RS18445 - MaoC family dehydratase, at 498,967 to 499,425
_RS18445
ABZR87_RS18450: ABZR87_RS18450 - CoA transferase, at 499,425 to 500,651
_RS18450
Position (kb) 498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 497.572 kb on + strand at 497.574 kb on + strand at 497.588 kb on + strand at 497.588 kb on + strand at 497.588 kb on + strand at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.994 kb on + strand, within ABZR87_RS18435 at 497.995 kb on - strand, within ABZR87_RS18435 at 497.995 kb on - strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.026 kb on + strand, within ABZR87_RS18435 at 498.027 kb on - strand, within ABZR87_RS18435 at 498.057 kb on + strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.058 kb on - strand, within ABZR87_RS18435 at 498.228 kb on + strand, within ABZR87_RS18435 at 498.229 kb on - strand, within ABZR87_RS18435 at 498.229 kb on - strand, within ABZR87_RS18435 at 498.241 kb on - strand, within ABZR87_RS18435 at 498.584 kb on + strand at 498.585 kb on - strand at 498.701 kb on + strand, within ABZR87_RS18440 at 498.702 kb on - strand, within ABZR87_RS18440 at 498.853 kb on + strand, within ABZR87_RS18440 at 498.854 kb on - strand, within ABZR87_RS18440 at 499.030 kb on + strand, within ABZR87_RS18445 at 499.031 kb on - strand, within ABZR87_RS18445 at 499.060 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.108 kb on + strand, within ABZR87_RS18445 at 499.464 kb on + strand at 499.489 kb on - strand at 499.489 kb on - strand at 499.603 kb on - strand, within ABZR87_RS18450 at 499.716 kb on + strand, within ABZR87_RS18450 at 499.717 kb on - strand, within ABZR87_RS18450 at 499.753 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.939 kb on - strand, within ABZR87_RS18450
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 497,572 + +0.4 497,574 + -1.9 497,588 + +0.7 497,588 + -0.7 497,588 + +0.1 497,994 + ABZR87_RS18435 0.39 -0.3 497,994 + ABZR87_RS18435 0.39 +0.7 497,994 + ABZR87_RS18435 0.39 -1.5 497,994 + ABZR87_RS18435 0.39 +0.1 497,995 - ABZR87_RS18435 0.40 +1.4 497,995 - ABZR87_RS18435 0.40 -2.8 498,026 + ABZR87_RS18435 0.43 -0.9 498,026 + ABZR87_RS18435 0.43 +1.6 498,026 + ABZR87_RS18435 0.43 -0.5 498,026 + ABZR87_RS18435 0.43 +0.7 498,027 - ABZR87_RS18435 0.43 +0.6 498,057 + ABZR87_RS18435 0.46 +1.7 498,058 - ABZR87_RS18435 0.46 +0.2 498,058 - ABZR87_RS18435 0.46 -0.1 498,058 - ABZR87_RS18435 0.46 +0.4 498,228 + ABZR87_RS18435 0.64 +0.5 498,229 - ABZR87_RS18435 0.64 +0.4 498,229 - ABZR87_RS18435 0.64 -0.3 498,241 - ABZR87_RS18435 0.65 -0.2 498,584 + -0.8 498,585 - +0.2 498,701 + ABZR87_RS18440 0.34 -1.4 498,702 - ABZR87_RS18440 0.35 -0.6 498,853 + ABZR87_RS18440 0.73 -1.1 498,854 - ABZR87_RS18440 0.73 -1.3 499,030 + ABZR87_RS18445 0.14 -1.7 499,031 - ABZR87_RS18445 0.14 -0.6 499,060 + ABZR87_RS18445 0.20 +2.0 499,108 + ABZR87_RS18445 0.31 +0.2 499,108 + ABZR87_RS18445 0.31 +0.5 499,108 + ABZR87_RS18445 0.31 -0.9 499,464 + +2.4 499,489 - -0.2 499,489 - -0.0 499,603 - ABZR87_RS18450 0.15 +1.0 499,716 + ABZR87_RS18450 0.24 -1.1 499,717 - ABZR87_RS18450 0.24 -0.4 499,753 - ABZR87_RS18450 0.27 +0.1 499,789 - ABZR87_RS18450 0.30 -0.8 499,789 - ABZR87_RS18450 0.30 -0.5 499,938 + ABZR87_RS18450 0.42 -0.4 499,938 + ABZR87_RS18450 0.42 -1.5 499,938 + ABZR87_RS18450 0.42 -0.2 499,938 + ABZR87_RS18450 0.42 -0.1 499,939 - ABZR87_RS18450 0.42 -1.4
Or see this region's nucleotide sequence