Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17790

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17785 and ABZR87_RS17790 are separated by 27 nucleotidesABZR87_RS17790 and ABZR87_RS17795 are separated by 35 nucleotidesABZR87_RS17795 and ABZR87_RS17800 are separated by 326 nucleotides ABZR87_RS17785: ABZR87_RS17785 - AEC family transporter, at 351,102 to 352,055 _RS17785 ABZR87_RS17790: ABZR87_RS17790 - alpha/beta hydrolase, at 352,083 to 353,129 _RS17790 ABZR87_RS17795: ABZR87_RS17795 - cupin domain-containing protein, at 353,165 to 353,563 _RS17795 ABZR87_RS17800: ABZR87_RS17800 - hypothetical protein, at 353,890 to 354,141 _RS17800 Position (kb) 352 353 354Strain fitness (log2 ratio) -2 -1 0 1at 351.222 kb on + strand, within ABZR87_RS17785at 351.222 kb on + strand, within ABZR87_RS17785at 351.223 kb on - strand, within ABZR87_RS17785at 351.223 kb on - strand, within ABZR87_RS17785at 351.225 kb on + strand, within ABZR87_RS17785at 351.225 kb on + strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.226 kb on - strand, within ABZR87_RS17785at 351.423 kb on + strand, within ABZR87_RS17785at 351.423 kb on + strand, within ABZR87_RS17785at 351.424 kb on - strand, within ABZR87_RS17785at 351.484 kb on + strand, within ABZR87_RS17785at 351.544 kb on - strand, within ABZR87_RS17785at 351.904 kb on - strand, within ABZR87_RS17785at 352.181 kb on - strandat 352.310 kb on - strand, within ABZR87_RS17790at 352.348 kb on + strand, within ABZR87_RS17790at 352.348 kb on + strand, within ABZR87_RS17790at 352.348 kb on + strand, within ABZR87_RS17790at 352.408 kb on + strand, within ABZR87_RS17790at 352.408 kb on + strand, within ABZR87_RS17790at 352.408 kb on + strand, within ABZR87_RS17790at 352.408 kb on + strand, within ABZR87_RS17790at 352.409 kb on - strand, within ABZR87_RS17790at 352.409 kb on - strand, within ABZR87_RS17790at 352.409 kb on - strand, within ABZR87_RS17790at 352.516 kb on + strand, within ABZR87_RS17790at 352.516 kb on + strand, within ABZR87_RS17790at 352.517 kb on - strand, within ABZR87_RS17790at 352.525 kb on + strand, within ABZR87_RS17790at 352.592 kb on - strand, within ABZR87_RS17790at 352.804 kb on + strand, within ABZR87_RS17790at 352.823 kb on - strand, within ABZR87_RS17790at 352.823 kb on - strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.858 kb on + strand, within ABZR87_RS17790at 352.859 kb on - strand, within ABZR87_RS17790at 352.859 kb on - strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.864 kb on + strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.865 kb on - strand, within ABZR87_RS17790at 352.874 kb on - strand, within ABZR87_RS17790at 352.874 kb on - strand, within ABZR87_RS17790at 352.930 kb on + strand, within ABZR87_RS17790at 352.931 kb on - strand, within ABZR87_RS17790at 353.208 kb on + strand, within ABZR87_RS17795at 353.208 kb on + strand, within ABZR87_RS17795at 353.208 kb on + strand, within ABZR87_RS17795at 353.208 kb on + strand, within ABZR87_RS17795at 353.208 kb on + strand, within ABZR87_RS17795at 353.208 kb on + strand, within ABZR87_RS17795at 353.208 kb on + strand, within ABZR87_RS17795at 353.209 kb on - strand, within ABZR87_RS17795at 353.209 kb on - strand, within ABZR87_RS17795at 353.209 kb on - strand, within ABZR87_RS17795at 353.528 kb on + strandat 353.639 kb on + strandat 353.640 kb on - strandat 353.640 kb on - strandat 353.640 kb on - strandat 353.640 kb on - strandat 353.671 kb on + strandat 353.672 kb on - strandat 353.672 kb on - strandat 353.681 kb on + strandat 353.681 kb on + strandat 353.681 kb on + strandat 353.682 kb on - strandat 353.682 kb on - strandat 353.721 kb on + strandat 353.741 kb on - strandat 353.783 kb on + strandat 353.784 kb on - strandat 353.797 kb on + strandat 354.028 kb on + strand, within ABZR87_RS17800at 354.029 kb on - strand, within ABZR87_RS17800at 354.058 kb on + strand, within ABZR87_RS17800at 354.058 kb on + strand, within ABZR87_RS17800at 354.058 kb on + strand, within ABZR87_RS17800at 354.058 kb on + strand, within ABZR87_RS17800at 354.059 kb on - strand, within ABZR87_RS17800at 354.059 kb on - strand, within ABZR87_RS17800at 354.059 kb on - strand, within ABZR87_RS17800at 354.088 kb on + strand, within ABZR87_RS17800at 354.088 kb on + strand, within ABZR87_RS17800at 354.088 kb on + strand, within ABZR87_RS17800at 354.088 kb on + strand, within ABZR87_RS17800at 354.089 kb on - strand, within ABZR87_RS17800at 354.121 kb on + strandat 354.121 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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351,222 + ABZR87_RS17785 0.13 -0.3
351,222 + ABZR87_RS17785 0.13 -1.0
351,223 - ABZR87_RS17785 0.13 +0.5
351,223 - ABZR87_RS17785 0.13 -0.9
351,225 + ABZR87_RS17785 0.13 -1.8
351,225 + ABZR87_RS17785 0.13 +0.5
351,226 - ABZR87_RS17785 0.13 -1.1
351,226 - ABZR87_RS17785 0.13 -1.4
351,226 - ABZR87_RS17785 0.13 +0.8
351,226 - ABZR87_RS17785 0.13 -0.6
351,226 - ABZR87_RS17785 0.13 -0.8
351,226 - ABZR87_RS17785 0.13 -0.6
351,226 - ABZR87_RS17785 0.13 -1.5
351,423 + ABZR87_RS17785 0.34 +0.0
351,423 + ABZR87_RS17785 0.34 -0.2
351,424 - ABZR87_RS17785 0.34 -1.7
351,484 + ABZR87_RS17785 0.40 +0.2
351,544 - ABZR87_RS17785 0.46 +0.9
351,904 - ABZR87_RS17785 0.84 -0.5
352,181 - -0.8
352,310 - ABZR87_RS17790 0.22 -0.2
352,348 + ABZR87_RS17790 0.25 +0.0
352,348 + ABZR87_RS17790 0.25 +0.6
352,348 + ABZR87_RS17790 0.25 -0.9
352,408 + ABZR87_RS17790 0.31 -1.5
352,408 + ABZR87_RS17790 0.31 +0.6
352,408 + ABZR87_RS17790 0.31 -0.8
352,408 + ABZR87_RS17790 0.31 -1.9
352,409 - ABZR87_RS17790 0.31 -1.0
352,409 - ABZR87_RS17790 0.31 -0.1
352,409 - ABZR87_RS17790 0.31 -0.4
352,516 + ABZR87_RS17790 0.41 +0.1
352,516 + ABZR87_RS17790 0.41 -0.8
352,517 - ABZR87_RS17790 0.41 -0.4
352,525 + ABZR87_RS17790 0.42 +0.8
352,592 - ABZR87_RS17790 0.49 -1.0
352,804 + ABZR87_RS17790 0.69 +1.4
352,823 - ABZR87_RS17790 0.71 +0.1
352,823 - ABZR87_RS17790 0.71 -0.6
352,858 + ABZR87_RS17790 0.74 +0.2
352,858 + ABZR87_RS17790 0.74 -0.0
352,858 + ABZR87_RS17790 0.74 +0.4
352,858 + ABZR87_RS17790 0.74 -0.6
352,858 + ABZR87_RS17790 0.74 -1.8
352,858 + ABZR87_RS17790 0.74 -0.7
352,859 - ABZR87_RS17790 0.74 +0.7
352,859 - ABZR87_RS17790 0.74 +0.1
352,864 + ABZR87_RS17790 0.75 -0.8
352,864 + ABZR87_RS17790 0.75 -1.0
352,864 + ABZR87_RS17790 0.75 -0.6
352,864 + ABZR87_RS17790 0.75 -0.4
352,864 + ABZR87_RS17790 0.75 +0.2
352,864 + ABZR87_RS17790 0.75 -0.6
352,865 - ABZR87_RS17790 0.75 -0.6
352,865 - ABZR87_RS17790 0.75 -0.4
352,865 - ABZR87_RS17790 0.75 -1.3
352,865 - ABZR87_RS17790 0.75 +0.1
352,865 - ABZR87_RS17790 0.75 +0.5
352,865 - ABZR87_RS17790 0.75 +0.5
352,874 - ABZR87_RS17790 0.76 -1.1
352,874 - ABZR87_RS17790 0.76 -0.4
352,930 + ABZR87_RS17790 0.81 +0.3
352,931 - ABZR87_RS17790 0.81 +0.2
353,208 + ABZR87_RS17795 0.11 +0.4
353,208 + ABZR87_RS17795 0.11 -0.8
353,208 + ABZR87_RS17795 0.11 -0.4
353,208 + ABZR87_RS17795 0.11 +0.5
353,208 + ABZR87_RS17795 0.11 +0.2
353,208 + ABZR87_RS17795 0.11 +1.1
353,208 + ABZR87_RS17795 0.11 +0.4
353,209 - ABZR87_RS17795 0.11 +0.0
353,209 - ABZR87_RS17795 0.11 -0.2
353,209 - ABZR87_RS17795 0.11 +0.8
353,528 + -0.7
353,639 + -1.2
353,640 - -2.0
353,640 - -0.2
353,640 - +1.0
353,640 - -0.5
353,671 + +0.5
353,672 - +0.1
353,672 - +0.5
353,681 + -0.9
353,681 + -0.8
353,681 + -0.1
353,682 - +0.1
353,682 - +0.5
353,721 + +0.8
353,741 - -0.0
353,783 + +0.4
353,784 - -0.6
353,797 + -0.5
354,028 + ABZR87_RS17800 0.55 -0.6
354,029 - ABZR87_RS17800 0.55 +0.0
354,058 + ABZR87_RS17800 0.67 +0.3
354,058 + ABZR87_RS17800 0.67 -0.8
354,058 + ABZR87_RS17800 0.67 -0.8
354,058 + ABZR87_RS17800 0.67 +0.2
354,059 - ABZR87_RS17800 0.67 -0.2
354,059 - ABZR87_RS17800 0.67 +0.1
354,059 - ABZR87_RS17800 0.67 -1.8
354,088 + ABZR87_RS17800 0.79 -0.1
354,088 + ABZR87_RS17800 0.79 -0.2
354,088 + ABZR87_RS17800 0.79 -1.2
354,088 + ABZR87_RS17800 0.79 -0.4
354,089 - ABZR87_RS17800 0.79 -0.8
354,121 + +0.4
354,121 + -1.3

Or see this region's nucleotide sequence